Locus 4163

Sequence ID 3R_DroMel_CAF1
Location 11,327,196 – 11,327,298
Length 102
Max. P 0.963833
window6677

overview

Window 7

Location 11,327,196 – 11,327,298
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.08
Mean single sequence MFE -44.90
Consensus MFE -37.24
Energy contribution -38.30
Covariance contribution 1.06
Combinations/Pair 1.12
Mean z-score -2.27
Structure conservation index 0.83
SVM decision value 1.56
SVM RNA-class probability 0.963833
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11327196 102 + 27905053
CCUCGACUCGGUCCGGUCGCCUCGAGGUUGUAACUUAAUUAAGUCGCAGUCGAUCUGGGCGGGGCAGCAGCUGCUCCA------------------UUUGGGCCAGGAGUUGAGCAAUUG
.(((((((((((((((..((((.(((..((..((((....))))..))..)..)).))))(((((((...))))))).------------------.)))))))..))))))))...... ( -45.40)
>DroSec_CAF1 66381 102 + 1
CCUCGGCUCAGUCCGGUCGCCUCGAGGUUGUAACUUAAUUAAGUCGCAGUCGAUCUGGGCGGGGCAGCAGCUGCUCCU------------------UUUGGGCCAGGAGUCGAGCAAUUG
.((((((((.((((((..((((.(((..((..((((....))))..))..)..)).))))(((((((...))))))).------------------.))))))...))))))))...... ( -44.30)
>DroSim_CAF1 64543 102 + 1
CCUCGACUCAGUCCGGUCGCCUCGAGGUUGUAACUUAAUUAAGUCGCAGUCGAUCUGGGCGGGGCAGCAGCUGCUCCU------------------UUUGGGCCAGGAGUCGAGCAAUUG
.((((((((.((((((..((((.(((..((..((((....))))..))..)..)).))))(((((((...))))))).------------------.))))))...))))))))...... ( -44.90)
>DroEre_CAF1 61808 115 + 1
CCUCGACUCU-----GUCGCCCCGAGGUUGUAACUUAAUUAAGUCCAAGUCGAUCUGGGUGGGGCAGCAGCUGCUCCGGCUGCUCCGGCUGCUCCUUUUGGUGCAGGAGCCGAGCAAUUG
.((((.((((-----(((((((((((((((..((((....))))......))))))...))))))((((((((...))))))))..)))(((.((....)).))))))).))))...... ( -45.00)
>consensus
CCUCGACUCAGUCCGGUCGCCUCGAGGUUGUAACUUAAUUAAGUCGCAGUCGAUCUGGGCGGGGCAGCAGCUGCUCCU__________________UUUGGGCCAGGAGUCGAGCAAUUG
.((((((((.((((((..((((.(((..((..((((....))))..))..)..)).))))(((((((...)))))))....................))))))...))))))))...... (-37.24 = -38.30 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:56 2006