Locus 4161

Sequence ID 3R_DroMel_CAF1
Location 11,325,592 – 11,325,692
Length 100
Max. P 0.550144
window6673

overview

Window 3

Location 11,325,592 – 11,325,692
Length 100
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 80.78
Mean single sequence MFE -20.57
Consensus MFE -15.32
Energy contribution -15.57
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.75
SVM decision value 0.03
SVM RNA-class probability 0.550144
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11325592 100 - 27905053
ACAUUUUGAGGCUCUUCAAAGAGGCGAGACCGAAUCAUUUGCCAUAACACUUUGGCAAUGCCAUCGUCAUCCUGGCUUUCCAUCCCAUCCG--AUUCCAUCA
.........(.((((....)))).)..((..(((((..((((((........)))))).((((.........))))..............)--))))..)). ( -23.30)
>DroSec_CAF1 64800 82 - 1
ACAUUUUGAGGCUCUCCAACGAGGCGAGACCGAAUCAUUUGCCAUAACACUUUGGCAAUGCCAUCGUCAUCCU--------------------ACUCCAUCC
.......(((........(((((((((.......))..((((((........)))))).))).))))......--------------------.)))..... ( -18.56)
>DroSim_CAF1 61083 82 - 1
ACAUUUUGAGGCUCUCCAACGAGGCGAGACCGAAUCAUUUGCCAUAACACUUUGGCAAUGCCAUCGUCAUCCU--------------------AUUCCAUCC
......((((((((.((.....)).))).))((.....((((((........)))))).....)).)))....--------------------......... ( -17.70)
>DroEre_CAF1 60147 100 - 1
ACAUUUUGAGGCCCUCCAACGAGGCGAGACCGAAUCAUUUGCCAUAACACUUGGGCAAUGCCAUCGUCAUCCUGGCUUUCCAUCCCAGGCCAU--GUUAUCC
.........(((((((....))))((....))........)))((((((((((((....((((.........)))).......))))))...)--))))).. ( -22.70)
>consensus
ACAUUUUGAGGCUCUCCAACGAGGCGAGACCGAAUCAUUUGCCAUAACACUUUGGCAAUGCCAUCGUCAUCCU____________________AUUCCAUCC
.......(((((........((..((....))..))..((((((........)))))).))).))..................................... (-15.32 = -15.57 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:52 2006