| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,325,437 – 11,325,552 |
| Length | 115 |
| Max. P | 0.996206 |
| Location | 11,325,437 – 11,325,552 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.72 |
| Mean single sequence MFE | -23.33 |
| Consensus MFE | -20.95 |
| Energy contribution | -20.79 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.90 |
| SVM decision value | 2.67 |
| SVM RNA-class probability | 0.996206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11325437 115 - 27905053 UCGUGUACCAACAUCUUUAUGGGUAAUUAAAACUUUUGCCCAUUUUUGCCUGAAAGUUGGUUUUUGUUUUGCCCAAUCCCCUUCCAUGCCCAUACCAAUUGGAUACCCAAUCC-----GC ..((((.((((......((((((((..((((((....(((.((((((....)))))).)))....))))))...............))))))))....)))))))).......-----.. ( -22.03) >DroSec_CAF1 64647 115 - 1 UCGUGUACCAACAUCUUUAUGGGUAAUUAAAACUUUUGCCCAUUUUUGCCUGAAAGUUGGUUUUUGUUUUGCCCAAUCCCCUGCCAUGCCCAUACCAAUUGGAUUCCCAAUAC-----CC ..((((....))))...((((((((..((((((....(((.((((((....)))))).)))....))))))..((......))...))))))))...(((((....)))))..-----.. ( -22.40) >DroSim_CAF1 60930 115 - 1 UCGUGUACCAACAUCUUUAUGGGUAAUUAAAACUUUUGCCCAUUUUUGCCUGAAAGUUGGUUUUUGUUUUGCCCAAUCCCCUGGCAUGCCCAUACCAAUUGGAUUCCCAAUAC-----CC ..((((....))))...((((((((...(((((....(((.((((((....)))))).)))....)))))(((.........))).))))))))...(((((....)))))..-----.. ( -26.50) >DroEre_CAF1 59992 117 - 1 UCGUGUACCAACAUCUUUAUGGGUAAUUAAAACUUUUGCCCAUUUUUGUCUGAAAGUUGGCUUUUGUUUUGCACAAUCCCC---CAUGCCCAUACCAAUUGGAUUCCCAAUCCCGAUCCC (((..............((((((((..((((((....(((.((((((....)))))).)))....))))))..........---..))))))))...(((((....)))))..))).... ( -22.74) >DroYak_CAF1 61726 117 - 1 UCGUGUACCAACAUCUUUAUGGGUAAUUAAAACUUUUGCCCAUUUUUGCCUGAAAGUUGGUUUUUGUUUUGCACAAUCCCA---CAUGCCCAUACCAAUUGGAUUCCCAAUCCCACUCCC ..(((............((((((((.....((((((((..((....))..))))))))((...((((.....))))..)).---..))))))))...(((((....)))))..))).... ( -23.00) >consensus UCGUGUACCAACAUCUUUAUGGGUAAUUAAAACUUUUGCCCAUUUUUGCCUGAAAGUUGGUUUUUGUUUUGCCCAAUCCCCU__CAUGCCCAUACCAAUUGGAUUCCCAAUCC_____CC ..((((....))))...((((((((..((((((....(((.((((((....)))))).)))....))))))...............))))))))...(((((....)))))......... (-20.95 = -20.79 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:51 2006