Locus 4156

Sequence ID 3R_DroMel_CAF1
Location 11,323,615 – 11,323,724
Length 109
Max. P 0.638574
window6661

overview

Window 1

Location 11,323,615 – 11,323,724
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.72
Mean single sequence MFE -19.08
Consensus MFE -14.76
Energy contribution -14.64
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.64
Structure conservation index 0.77
SVM decision value 0.22
SVM RNA-class probability 0.638574
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11323615 109 + 27905053
UACCGUAGUAGCUCCAACC--CCCCCAUCAA--------AUACCCCACCUCAACGCUGAAAACGCUCCUGCUUGCGUGGGGAUUU-UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA
....(((((.(((......--........((--------((.((((((..(((.((.((......))..))))).))))))))))-...........)))....)))))........... ( -18.11)
>DroSec_CAF1 62861 108 + 1
UACCGUAGUAGCUCCAACC--C-CCCAUCAA--------AUACCCCACCUCAGCCCUCAAAUCGCUCCUGCUUGCGUGGGGAUUU-UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA
....(((((.(((......--.-......((--------((.((((((...(((...............)))...))))))))))-...........)))....)))))........... ( -16.61)
>DroSim_CAF1 59139 108 + 1
UACCGUAGUAGCUCCAACC--C-CCCAUAAA--------AUACCCCACCUCAAUGCUCAAAACGCUCCUGCUUGCGUGGGGAUUU-UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA
....(((((.(((......--.-.....(((--------((.((((((..(((.((.............))))).))))))))))-)..........)))....)))))........... ( -19.37)
>DroEre_CAF1 58174 107 + 1
UACCGUAGUAGCUCCA---------CGCCA---ACCUCGAUUCCCCACCUCAACGCUCCCA-GGCUUCUGCUUGCGUGGGGAUUUUUUUCAAUUUUUGGCGAAAAUUACAUCAUCACUUA
.......((((.....---------(((((---(....((.(((((((...........((-(((....))))).)))))))......)).....))))))....))))........... ( -24.10)
>DroYak_CAF1 59836 117 + 1
UACCGUAGUAGCUCAAACCAAC-CCCCCCAAAUACCCCAAUUUCCCACCUCAACGCUUACA-AGCUUCUGCUUGCGUGGGGAUUU-UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA
....(((((.(((.(((.....-......((((......))))....(((((.(((....(-(((....))))))))))))....-.......))).)))....)))))........... ( -17.20)
>consensus
UACCGUAGUAGCUCCAACC__C_CCCAUCAA________AUACCCCACCUCAACGCUCAAA_CGCUCCUGCUUGCGUGGGGAUUU_UUUCAAUUUUUAGCGAAAAUUACAUCAUCACUUA
....(((((.................................((((((..(((.((.............))))).)))))).....((((..........)))))))))........... (-14.76 = -14.64 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:40 2006