Locus 4155

Sequence ID 3R_DroMel_CAF1
Location 11,323,145 – 11,323,258
Length 113
Max. P 0.687108
window6660

overview

Window 0

Location 11,323,145 – 11,323,258
Length 113
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 89.01
Mean single sequence MFE -33.80
Consensus MFE -24.92
Energy contribution -25.76
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.83
Structure conservation index 0.74
SVM decision value 0.32
SVM RNA-class probability 0.687108
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11323145 113 - 27905053
CUGUAAUGGCUAUCCAUUACCGGGGACC----UGCAACGGUCAACGUCAAACCCCAGGCCCAAGAAACUCCCUUGGAAUUACGCUGAUGACUCAAUGUGUUCCUUGGGGAGGAGUAA
(.(((((((....))))))).)(((.((----((....(((.........))).)))))))......((((((.(((((.(((.(((....))).))))))))..))))))...... ( -37.40)
>DroSec_CAF1 62386 110 - 1
CUGUAAUGGCUAUCCAUUACCG--GACC----UGCAACGGUCAAACUCA-ACCCCAAGCCCAAGAAACUCCCUCGGAAUUACGCUGAUGACUCAAUGUGUUCCUUGGGGAGGAGUAA
(.(((((((....))))))).)--((((----......))))..((((.-.((((((......((.......))(((((.(((.(((....))).))))))))))))))..)))).. ( -34.90)
>DroSim_CAF1 58668 110 - 1
CUGUAAUGGCUAUCAAUUACCG--GACC----UGCAACGGUCAAACUCA-ACCCCAAGCCCAAGAAACUCCCUCGGAAUUACGCUGAUGACUCAAUGUGUUCCUUGGGGAGGAGUCA
(.(((((........))))).)--((((----......))))..((((.-.((((((......((.......))(((((.(((.(((....))).))))))))))))))..)))).. ( -29.80)
>DroEre_CAF1 57682 110 - 1
CCGUAAUGGCCAUCCAUUACCG--GACC----UGCAACGGUCAAACUCC-ACCCCAGGCCGAAGAAACUCCCUCGGAAUUACGCUGAUGGCUCAAUGUGCUCCUUGGGGAGGCGGAA
(((((((((....)))))).))--)..(----(((..(((((.......-......)))))......((((((.(((..((((.(((....))).)))).)))..)))))))))).. ( -36.32)
>DroYak_CAF1 59283 112 - 1
CUGUAAUGGCUAUCCAUUACCA--GACCAAACUCAAAC--UCAAACUCC-ACCCCAAGCUGAAGAAACUCCCCUGGAAUUACGCUGAUGACUCAAUGUGCUCCUUGGGGAGGAGGAA
(((((((((....)))))).))--).............--.....((((-.(((((((..(.......(((...)))..((((.(((....))).)))))..))))))).))))... ( -30.60)
>consensus
CUGUAAUGGCUAUCCAUUACCG__GACC____UGCAACGGUCAAACUCA_ACCCCAAGCCCAAGAAACUCCCUCGGAAUUACGCUGAUGACUCAAUGUGUUCCUUGGGGAGGAGUAA
..(((((((....)))))))....((((..........)))).........................((((((.(((((.(((.(((....))).))))))))..))))))...... (-24.92 = -25.76 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:39 2006