| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,320,025 – 11,320,145 |
| Length | 120 |
| Max. P | 0.881696 |
| Location | 11,320,025 – 11,320,145 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.67 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -25.45 |
| Energy contribution | -25.29 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11320025 120 + 27905053 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCAAACUUCUCAGCCAAAUCAGCGAUUUCGCAAGGCGGAAUUUAUUUAAUUUGCAUACGUAUUUAUGUGUUAAAU (((((((((...)))))...))))......(((((((((((((..............)))......(((....)))))))))))))..(((((((..(((((......)))))))))))) ( -24.54) >DroSec_CAF1 59207 119 + 1 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUCUCAGCCAAAUCAGCGAUUUCGCAAGGCGGAACUUAU-UAAUUUGCAUACGUAUUUAGGUGCUAAAU .....((((((((((((..(((..((((((....((..(((((..............)))))..))(((....))).....))))))..)-))...)))))).......))))))..... ( -31.75) >DroSim_CAF1 55447 120 + 1 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUCUCAGCCAAAUCAGCGAUUUCGCAAGGCGAAAUUUAUUUAAUUUGCAUACGUAUUUAGGUGCUAAAU .....((((((((((((.((.(((......(((((((((((((..............)))......(((....)))))))))))))...))).)).)))))).......))))))..... ( -29.45) >DroEre_CAF1 54382 120 + 1 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUUUCAGCCAAAUCAGCGAUUUCGCAAAGUGGAAUUUAUUUAAUUUGCAUUCGGAUUUAGGUGUUAAGU (((..((((((.(((((..(((((((((((((((((..(((((..............)))))..).(((....))))))))))))))).))))...)))))........)))))).))). ( -30.04) >DroYak_CAF1 55880 120 + 1 CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUCUCAGCCAAAUCAGCGAUUUUGCAAAGUGGAAUUUAUUUAAUUUGCAUUCGGAUUUAGGUGUUAAGU (((..((((((.(((((..((((((((((((((((((.((((....)))).......((.......))......)))))))))))))).))))...)))))........)))))).))). ( -28.30) >consensus CUUUUGCACCUUGUGCACAUAAAGGGUUUCAUUUUGUCUUGGCACGCCAACUUCUCAGCCAAAUCAGCGAUUUCGCAAGGCGGAAUUUAUUUAAUUUGCAUACGUAUUUAGGUGUUAAAU .(((.((((((((((((..(((((((((((....((..(((((..............)))))..))(((....))).....))))))).))))...)))))).......)))))).))). (-25.45 = -25.29 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:25 2006