| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,312,150 – 11,312,270 |
| Length | 120 |
| Max. P | 0.681840 |
| Location | 11,312,150 – 11,312,270 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.39 |
| Mean single sequence MFE | -41.28 |
| Consensus MFE | -27.31 |
| Energy contribution | -27.37 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11312150 120 - 27905053 ACAUGCCGUGUAGCCGCUGUGUGGUGGCCACCAGGAGCACCCGCUGAUCCAGCAGCAGCCAGAAGAGGAAGAGCGCCGCGUGCUCCACCACCUGUGGCUGCUCCUCGUAGCCCAUACACU .......((((((((((...)))))(((.((.((((((....((((......))))(((((.(.(.((..((((((...))))))..)).).).))))))))))).)).)))..))))). ( -51.60) >DroVir_CAF1 57753 120 - 1 ACAUUGCAUGCAGUCGGUUAGUCGUGGCCACCAGCAGCACGCGCUGAUCAAGCAGCGACCAGAAUAGAUACAGUGUCGCAUGUUCCACCACUUUUGGCUGCUCCUCAUAACCCAUGCAUU ....(((((((((((((..(((.((((.......((((....))))....((((((((((............).))))).)))))))).))).))))))))............))))).. ( -33.80) >DroGri_CAF1 54025 120 - 1 ACAUUGUGUGCAGCCGAUUGGUGGUGGCCACCAGCAGCACACGCUGAUCCAGCAUCAGCCAGAACAGAUACAGUGCUGCAUGCUCCACAACCUGGGGCUGCUCCUCGUAGCCCAUGCUUU .((...((((.(((....((((((...))))))(((((((...(((.((..((....))..)).))).....)))))))..))).))))...))(((((((.....)))))))....... ( -48.20) >DroWil_CAF1 58226 120 - 1 ACAUGCUAUGCAAUCGAUUGGUGGUAGCCACCAGCAUAACCCGUUGCUCCAGCAGUAGCCAAAACAAGUAAAGAGCCGCAUGUUCCACCACCUGCGGCUGCUCCUCAUAGCCCAUGCACU ....((((((........((((((...))))))((.......((((((.....))))))..............(((((((.((......)).)))))))))....))))))......... ( -33.80) >DroMoj_CAF1 58109 120 - 1 ACAUGGUGUGCAGUCGAUUGUUGGUGGCCACCAGCAUCACGCGCUCAUCCAGCAGCAGCCAGAACAGAUACAGUGCUGCAUGCUCCACUACUUGUGGCUGCUCCUCGUAUCCCAUGCAUU .(((((..(((.((.(((.((((((....)))))))))))..(((.....)))((((((((.((.......((((..(....)..))))..)).))))))))....)))..))))).... ( -39.30) >DroAna_CAF1 47773 120 - 1 ACAUGCUGUGCAGCCGAUUGGUGGUGGCGACCAGCACCACCCGCUGAUCGAGCAGUAACCAGAAGAUAUACAGAGCCGCAUGCUCUACCACCUGUGGCUGCUCCUCGUAACCCAUGCACU .......(((((...(((..(((((((.(.....).))).))))..)))(((((((...(((..(.....)(((((.....))))).....)))..)))))))...........))))). ( -41.00) >consensus ACAUGCUGUGCAGCCGAUUGGUGGUGGCCACCAGCAGCACCCGCUGAUCCAGCAGCAGCCAGAACAGAUACAGUGCCGCAUGCUCCACCACCUGUGGCUGCUCCUCGUAGCCCAUGCACU .........(((((((...((((((((....((((.......))))....((((((.(((............).)).)).))))))))))))..)))))))................... (-27.31 = -27.37 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:21 2006