Locus 4144

Sequence ID 3R_DroMel_CAF1
Location 11,305,056 – 11,305,153
Length 97
Max. P 0.923502
window6639

overview

Window 9

Location 11,305,056 – 11,305,153
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 97.92
Mean single sequence MFE -22.37
Consensus MFE -20.97
Energy contribution -20.97
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.41
Structure conservation index 0.94
SVM decision value 1.16
SVM RNA-class probability 0.923502
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11305056 97 + 27905053
AGACACUAUUUUCGAUUCCAGAGUCAGAGCCCUGACCAAUUUGGAUUUGUUUAAAAGAACAGAAAGUAGUCACCAUGUGGUAAUAAUUUAAAUAUAC
....(((((((((...(((((((((((....)))))...))))))..(((((....)))))))))))))).(((....)))................ ( -24.10)
>DroSec_CAF1 39638 95 + 1
AGACACUAUUUUCGAUUCCAGAGUCA--GCCCUGACCAAUUUGGAUUUGUUUAAACGAACAGAAAGUAGUCACCAUGUGGUAAUAAUUUAAAUAUAC
....(((((((((...((((((((((--....))))...))))))..(((((....)))))))))))))).(((....)))................ ( -21.50)
>DroSim_CAF1 40489 95 + 1
AGACACUAUUUUCGAUUCCAGAGUCA--GCCCUGACCAAUUUGGAUUUGUUUAAACGAACAGAAAGUAGUCACCAUGUGGUAAUAAUUUAAAUAUAC
....(((((((((...((((((((((--....))))...))))))..(((((....)))))))))))))).(((....)))................ ( -21.50)
>consensus
AGACACUAUUUUCGAUUCCAGAGUCA__GCCCUGACCAAUUUGGAUUUGUUUAAACGAACAGAAAGUAGUCACCAUGUGGUAAUAAUUUAAAUAUAC
....(((((((((...((((((((((......))))...))))))..(((((....)))))))))))))).(((....)))................ (-20.97 = -20.97 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:18 2006