Locus 4141

Sequence ID 3R_DroMel_CAF1
Location 11,295,183 – 11,295,278
Length 95
Max. P 0.992724
window6634

overview

Window 4

Location 11,295,183 – 11,295,278
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 94.52
Mean single sequence MFE -24.38
Consensus MFE -21.12
Energy contribution -20.92
Covariance contribution -0.20
Combinations/Pair 1.12
Mean z-score -2.08
Structure conservation index 0.87
SVM decision value 2.35
SVM RNA-class probability 0.992724
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11295183 95 - 27905053
UAUUGGUCCCGCAUGACAAAGUUUAGCACAAUAAAAAAUCAUGUUUAUUGCUAAAUUAUGUUAUGACAGUCUUCUGUGGAGAGUAGCGAUUCUAG
..(((.((((.(((((((.(((((((((..(((((........)))))))))))))).)))))))((((....)))))).)).)))......... ( -24.70)
>DroSec_CAF1 29843 95 - 1
UAUUGGUCCCGCAUGACAAAGUUUGAGACAAUAAAAAAUCAUGUUUAUUGCUAUAUUAUGUUAUGACAGUCUUCUGUGGAGAGUAGCGAUUCUAG
..(((.((((.(((((((.(((...((.(((((((........)))))))))..))).)))))))((((....)))))).)).)))......... ( -20.60)
>DroSim_CAF1 30600 95 - 1
UAUUGGUCCCGCAUGACAAAGUUUGGGACAAUAAAAAAUCAUGUUUAUUGCUAAAUUAUGUUAUGACAGUCUUCUGUGGAGAGUAGCGAUUCUAG
..(((.((((.(((((((.(((((((..(((((((........)))))))))))))).)))))))((((....)))))).)).)))......... ( -22.90)
>DroEre_CAF1 28931 94 - 1
UAUUGGUCCCGCAUGACAAAGUUUAGCACAAUAAAAAAUCAUGUUUAUUGCUGAAUUAUGUUAUGACGGUCUUCUGUGGGGAGC-GGGAUUCUAG
....((((((((((((((.(((((((((..(((((........)))))))))))))).)))))).((((....)))).....))-)))))).... ( -30.40)
>DroYak_CAF1 29703 94 - 1
UAUUGGUGCCGCAUGACAAAGUUUAGCACAAUAAAAAAUCAUGUUUAUUGCUAAAUUAUGUUAUGACAGUCUUCUGUGGGGAGU-GCGAUUCUAG
.....(..((.(((((((.(((((((((..(((((........)))))))))))))).)))))))((((....))))...).).-.)........ ( -23.30)
>consensus
UAUUGGUCCCGCAUGACAAAGUUUAGCACAAUAAAAAAUCAUGUUUAUUGCUAAAUUAUGUUAUGACAGUCUUCUGUGGAGAGUAGCGAUUCUAG
........((.(((((((.(((((((..(((((((........)))))))))))))).)))))))((((....))))))(((((....))))).. (-21.12 = -20.92 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:14 2006