| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,288,727 – 11,288,823 |
| Length | 96 |
| Max. P | 0.978058 |
| Location | 11,288,727 – 11,288,823 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 71.96 |
| Mean single sequence MFE | -31.56 |
| Consensus MFE | -12.43 |
| Energy contribution | -13.82 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.39 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11288727 96 - 27905053 A--GACCAUGUUCAAUAGCAUGGGGAUUUCCAGGGGGGAUUUUCCGCAA---GGAAAGCAGCGGAAAGCACCUAAACCCACGCCCUUUAUGGAGAUCAUUA .--..((((((......)))))).((((((((((((((.((((((....---))))))..((.....)).............)))))).)))))))).... ( -36.10) >DroSec_CAF1 23497 98 - 1 AGAGACCAUGUUCAGUAGCUUGGGUAUUUCCAGUGGGAAUUUUUCGCAA---GGAAAACCGCGGAAAGCACCUCAACCCACGCCUUUCAUGGAGAUCAUAA .((..(((((...((..((.(((((.(((((.((((...((((((....---)))))))))))))))........))))).))))..)))))...)).... ( -30.20) >DroSim_CAF1 24134 98 - 1 AGAGACCAUGUUCAAUAGCAUGGGGAUUUCCAGUGGGGAUUUUCCGCAA---GGAAAACAGCGGAAGGCACCUCAACCCACGCCUUUCAUGGAGAUCAUUA .....((((((......)))))).((((((((((...(.((((((....---))))))).))(((((((............))))))).)))))))).... ( -37.90) >DroEre_CAF1 22591 97 - 1 -GAGACGAUGUACAACAAGAUGGUGAUUUCCAGUGGGGAUUUUCCCCAA---GGAAAACAGCUGAAGGCAACGCCACCGACGCCUUUCAUCGAGAUCAUUA -((..(((((...........(.((.(((((..(((((.....))))).---))))).)).).((((((..((....))..)))))))))))...)).... ( -30.80) >DroYak_CAF1 22986 97 - 1 -GAAACGAUGUACAAUAAGAUGGUGAUUUCGAGUGGGGAUUUUCCCCAG---AGAAAACAGCUGAAAGCAGCUCCACCGACGCCUUUCAUCGCGAUCAUUA -((..(((((........(.(((((.((((...(((((.....))))).---.))))..(((((....))))).))))).)......)))))...)).... ( -28.44) >DroPer_CAF1 29123 87 - 1 --------------GAAAGAUGUCGACAUCUUCAGGGGACUUUCCACUGGACAGAGAGCCGUUGAAGCCCGGUCCGCCCAUGGCUAUCCUGGAGAUCGUAA --------------...........(((((((((((((.(((((.........))))))).....((((.((....))...))))..))))))))).)).. ( -25.90) >consensus _GAGACCAUGUUCAAUAACAUGGGGAUUUCCAGUGGGGAUUUUCCGCAA___GGAAAACAGCGGAAAGCACCUCAACCCACGCCUUUCAUGGAGAUCAUUA ........................(((((((((((((..((((((.......))))))..((.....)).......)))))........)))))))).... (-12.43 = -13.82 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:09 2006