| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,274,577 – 11,274,667 |
| Length | 90 |
| Max. P | 0.784868 |
| Location | 11,274,577 – 11,274,667 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 76.53 |
| Mean single sequence MFE | -16.58 |
| Consensus MFE | -14.31 |
| Energy contribution | -13.82 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11274577 90 + 27905053 ----------GCGAAACGCUUAUUAGUGGUCAUAUUCGGCGGCAUAUUGAUAAGCAUAAUUUGCGAUAUGUUAAUGCGAUGCAAAUGGAUGAAAUCUAAA ----------.......((((((((((((((.........))).)))))))))))...(((((((...(((....))).))))))).............. ( -18.80) >DroVir_CAF1 9031 90 + 1 U-G-GUGGUGGAUACAAGUUAAUUAGUAGUCAUAUUCGGCGAUAUAUUGAUAAGCAUAAUUUGCGAAAUGUUAAUUUAAUGCAAAUGGCUU---U----- .-.-(((.....)))..((((((.....(((......))).....))))))((((...((((((.((((....))))...)))))).))))---.----- ( -14.90) >DroPse_CAF1 14946 79 + 1 U-A--------AGGGGGGCUUAUUAGUAGUCAUAUUCGGCGAUAUAUUGAUAAGCAUAAUUUGCGAAAUGUAAAUGCGAUGCAAAUGG------------ .-.--------......((((((((((((((......)))....)))))))))))...(((((((...(((....))).)))))))..------------ ( -17.10) >DroMoj_CAF1 10351 84 + 1 U--------GCAUAUAAGCUAAUUAGUAGUCAUAUUCGGCGAUAUAUAGAUAAGCAUAAUUUUCGAAAUGCUAAUUUAAUGCAAAUCGCUU---U----- (--------((((...............(((......)))......(((((.(((((..........))))).))))))))))........---.----- ( -12.80) >DroAna_CAF1 8539 85 + 1 GGAAGAG---GGGGAACGCUUAUUAGUAGUCAUAUUCGGCGGCAUAUUGAUAAGCAUAAUUUGCGAAAUGUAAAUGCGAUGCAAAUGG------------ .......---.......((((((((((((((.........))).)))))))))))...(((((((...(((....))).)))))))..------------ ( -18.80) >DroPer_CAF1 15063 79 + 1 U-A--------AGGGGGGCUUAUUAGUAGUCAUAUUCGGCGAUAUAUUGAUAAGCAUAAUUUGCGAAAUGUAAAUGCGAUGCAAAUGG------------ .-.--------......((((((((((((((......)))....)))))))))))...(((((((...(((....))).)))))))..------------ ( -17.10) >consensus U_A_______GAGAAAAGCUUAUUAGUAGUCAUAUUCGGCGAUAUAUUGAUAAGCAUAAUUUGCGAAAUGUAAAUGCGAUGCAAAUGG____________ .................((((((((((((((.........))).)))))))))))...(((((((...((......)).))))))).............. (-14.31 = -13.82 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:01 2006