Locus 4132

Sequence ID 3R_DroMel_CAF1
Location 11,273,186 – 11,273,297
Length 111
Max. P 0.700126
window6620

overview

Window 0

Location 11,273,186 – 11,273,297
Length 111
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 74.29
Mean single sequence MFE -53.08
Consensus MFE -16.45
Energy contribution -16.24
Covariance contribution -0.22
Combinations/Pair 1.43
Mean z-score -2.31
Structure conservation index 0.31
SVM decision value 0.35
SVM RNA-class probability 0.700126
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11273186 111 - 27905053
ACGCCCUGCGGCUCCAGUGGCCACUGGUGUCAGCGGGGCAAGUGUGUAUCCAACAAGCAUGGAUACGGACGCCAGGUGAACGGUGGAUGGGGACCAUGGACGCCAUUCACG
..((((((((((.(((((....))))).))).)))))))..((.((((((((.......)))))))).)).....(((((.((((.((((...))))...)))).))))). ( -53.70)
>DroPse_CAF1 13563 111 - 1
ACGCCGUGCAACCAAAACCGACACUGGUGCCAAAAGGGCAAGUGCGUGCCCCGGAAGGGGGGCCAGCUGCGCAAGGUGAACGGCGGAUGGGGGCCUUGGACGGUGUUCACG
.((((((...(((...((((....))))(((.....)))..((((((.((((....)))).)).....))))..)))..))))))..((((.(((......))).)))).. ( -47.70)
>DroEre_CAF1 7087 111 - 1
ACGCCCUGCGGCACCAGCGGCCACUGGUGUCAGCGGGGCAGGUGUGUGUCCAACAUGCUCGGAUACGGACUGCAGGUGAACGGUGGAUGGGGACCCUGGACGCCCUUCACG
..(((((((((((((((......)))))))).))))))).(((.(((((((.........))))))).)))....(((((.((((..((((...))))..)))).))))). ( -56.90)
>DroYak_CAF1 6870 111 - 1
ACGCCCUGCGGCUCCAGUGGCCACUGGUGUCAGAGGGGCAGGUGUGUGUCGAACAAGCACGGCUACGGACGCCAGGUGAACGGCGGAUGGGGACCCUGGACGCCGUUCACG
..(((((..(((.(((((....))))).)))...))))).(((((((((((........)))).))..)))))..((((((((((..((((...))))..)))))))))). ( -55.70)
>DroAna_CAF1 7157 111 - 1
ACCCCCUGCGGUUACAGUGAUCACUGGUGCCUGAAGGGCCGAUGUGUGCCGCGCCAGGGAAGCAACCAGCCAAAGGUGAGCGGUGGCUGGGGCCCCUGGUCGGCAUUCACU
...((((..(((..((((....))))..)))...))))....((.((((((.(((((((..((..(((((((..(.....)..))))))).))))))))))))))).)).. ( -53.60)
>DroPer_CAF1 13681 111 - 1
ACGCCGUGCAACCAAAACCGACACUGGUGCCAAAAGGGCAAGUGCGUGCCCCGGAAGGGGGGCCAGCUGCGCAAGGUGAACGGCGGAUGGGGGCCUUGGACGGUCUUCACG
.((((((...(((...((((....))))(((.....)))..((((((.((((....)))).)).....))))..)))..))))))..((((((((......)))))))).. ( -50.90)
>consensus
ACGCCCUGCGGCUACAGCGGCCACUGGUGCCAGAAGGGCAAGUGUGUGCCCAACAAGCGCGGCUACCGACGCAAGGUGAACGGCGGAUGGGGACCCUGGACGCCAUUCACG
..((((((((.(.............).)))....)))))..(((((((.((.........)).)))..))))...(((((.(.((...((....))....)).).))))). (-16.45 = -16.24 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:00 2006