Locus 4121

Sequence ID 3R_DroMel_CAF1
Location 11,240,782 – 11,240,902
Length 120
Max. P 0.755715
window6603

overview

Window 3

Location 11,240,782 – 11,240,902
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -45.02
Consensus MFE -42.33
Energy contribution -42.67
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.94
SVM decision value 0.49
SVM RNA-class probability 0.755715
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11240782 120 - 27905053
UAUCGGGCCGGCUGUUAUCAACGGCUGACCCGUGGCCGCGGAUGCCGAUACGUGCAUCUGCGAUGCGGCCAUUGGAGCUGCAAGGGAUCAGAUAAUAUUUUUAGCGCACAAUUUCGACAU
..(((((.(((((((.....))))))).)))((((((((((((((((...)).))))))))).(((((((....).)))))).....................)).)))......))... ( -45.40)
>DroSim_CAF1 1 120 - 1
UAUCGGGCCGGCUGUUAUCAACGGCUGACCCGUGGCCGCGGAUGCCGAUACGUGCAUCUGCGAUGCGGCCAUUGGAGCUGCAAGAGAUCAGAUAAUAUUAUUAACGCACAAUUUCCACAU
....(((.(((((((.....))))))).)))((((.(((((((((((...)).))))))))).(((((((....).))))))................................)))).. ( -45.20)
>DroYak_CAF1 1 120 - 1
UAUCGGGCCGGCUGUUAUCAACGGCUGACCCGUGGCCGCGGAUGCCGAUACGUGCAUCUGCGAGGCGGCCAUUGGAGCUGCGGGAGAUCAGAUCAUAUAAUUAGCGCACAAUUUCCAGAC
...((((.(((((((.....))))))).))))(((((((((((((((...)).)))))).....)))))))((((((.((((......................))))....)))))).. ( -44.45)
>consensus
UAUCGGGCCGGCUGUUAUCAACGGCUGACCCGUGGCCGCGGAUGCCGAUACGUGCAUCUGCGAUGCGGCCAUUGGAGCUGCAAGAGAUCAGAUAAUAUUAUUAGCGCACAAUUUCCACAU
....(((.(((((((.....))))))).)))((((((((((((((((...)).)))))))))..((((((....).)))))......................)).)))........... (-42.33 = -42.67 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:43 2006