Locus 412

Sequence ID 3R_DroMel_CAF1
Location 1,536,964 – 1,537,054
Length 90
Max. P 0.737574
window674

overview

Window 4

Location 1,536,964 – 1,537,054
Length 90
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 80.76
Mean single sequence MFE -24.33
Consensus MFE -17.28
Energy contribution -17.95
Covariance contribution 0.67
Combinations/Pair 1.05
Mean z-score -1.58
Structure conservation index 0.71
SVM decision value 0.44
SVM RNA-class probability 0.737574
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1536964 90 + 27905053
GACGAACUUGGUUCGCCACAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGUUGCGUCAGCAGCAG------------CAACAGCAUCGC---------CUCAAC
(.(((((...))))).).......((((((((((........)))))))))).((.(((((....))))).(------------(....))...))---------...... ( -23.50)
>DroPse_CAF1 37771 87 + 1
GACGAACAUGGUUCGCCACAAAAACAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGCUGCGUCAGCAGCAG---------------CAGCACCGC---------AUGAAU
......((((....((........((((((((((........)))))))))).((.(((((....))))).)---------------).))....)---------)))... ( -26.40)
>DroEre_CAF1 38030 96 + 1
GACGAACUUGGUUCGCCACAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGUUGCGUCAGCAGCAGCAACA------UCAACAGCAUCGC---------CUCAAC
.........(((..((........((((((((((........)))))))))).((.(((((....))))).))....------......))...))---------)..... ( -23.10)
>DroMoj_CAF1 39573 108 + 1
GACGAACAUGGUUCGCCCCAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAACUGCGCCACCAGCAACAACA---ACUGCAGCAGCAGCGUAACACACACAGUAAU
.(((....((((.(((........((((((((((........)))))))))).......)))..)))).........---.((((....)))))))............... ( -23.56)
>DroAna_CAF1 36563 99 + 1
GACGAACAUGGUUCGCCACAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGCUCCGACAACAACAGCA---GCAGCUCCAACAGAACCGC---------CUCAAC
...((...((((((((.......))(((((((((........)))))))))((((.(((.(..........).)---)).)))).....)))))).---------.))... ( -23.00)
>DroPer_CAF1 39210 87 + 1
GACGAACAUGGUUCGCCACAAAAACAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGCUGCGUCAGCAGCAG---------------CAGCACCGC---------AUGAAU
......((((....((........((((((((((........)))))))))).((.(((((....))))).)---------------).))....)---------)))... ( -26.40)
>consensus
GACGAACAUGGUUCGCCACAAAAGCAGAAGAAGGAGAAGACACCUUUUUUUGAGCAGCUGCGUCAGCAGCAG____________CAACAGCACCGC_________AUCAAC
(.(((((...))))).).......((((((((((........))))))))))....(((((....)))))......................................... (-17.28 = -17.95 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:33 2006