Locus 4117

Sequence ID 3R_DroMel_CAF1
Location 11,229,284 – 11,229,382
Length 98
Max. P 0.839121
window6597

overview

Window 7

Location 11,229,284 – 11,229,382
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 79.56
Mean single sequence MFE -23.90
Consensus MFE -17.45
Energy contribution -16.70
Covariance contribution -0.75
Combinations/Pair 1.36
Mean z-score -1.61
Structure conservation index 0.73
SVM decision value 0.74
SVM RNA-class probability 0.839121
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11229284 98 + 27905053
ACCCAGCUAAAGAAGUCCUUUUUGUUGGUCUGCCAUAGCUCCUUAACUGGAGCAAGAUCAAUCUGUUUGAAAGGAAAAGUAUAUGAUUAACUACAUUU
...............(((((((.((((((((......(((((......))))).))))))))......)))))))....................... ( -21.30)
>DroPse_CAF1 537 95 + 1
ACCCAGCUGAAGAAAUCCUUUUUGUUGGUCUGCCACAGCUCCCUCACGGGGGCCACAUCAAUCUGUG-GA-AUUAUAAAUAUAUA-UAUGAUAUGUGA
..(((((.((((.....))))..))))).....((((((((((....))))))((((......))))-..-((((((........-)))))).)))). ( -25.30)
>DroSim_CAF1 1738 98 + 1
ACCCAGCUGAAGAAGUCCUUCUUGUUGGUCUGCCAAAGCUCCUUAACUGGAGCAAGAUCAAUCUGUUUGAAACAAAAAGUAUAUAAUUAGCUACAUUU
....((((((..(.((.(((.(((((((....))...(((((......)))))....((((.....))))))))).))).)).)..))))))...... ( -23.00)
>DroEre_CAF1 535 98 + 1
ACCCAACUGAAGAAGUCCUUCUUGUUGGUCUGCCAAAGUUCCUUAACGGGUGCCAGAUCAAUCUGUUUGAAGGGGAAAGUAUAUACCUAAGUAUAUUU
.(((....((((.....))))..(((((((((.((..(((....)))...)).))))))))).........)))..((((((((......)))))))) ( -23.20)
>DroYak_CAF1 1809 98 + 1
ACCCAACUGAAGAAGUCCUUCUUGUUGGUCUGCCAGAGCUCCUUAACCGGAGCAAGAUCAAUCUGUUUACCAGGGAAAGCAUCAAAUUAGGUACAUUC
..(((((.((((.....))))..)))))..((((...(((((......)))))..........(((((.(....).)))))........))))..... ( -25.30)
>DroPer_CAF1 519 96 + 1
ACCCAGCUGAAGAAAUCCUUUUUGUUGGUCUGCCACAGCUCCCUCACGGGGGCCACAUCAAUCUGUGGGA-AUUAUAAAUAUAUA-UAUGAUAUGUGA
..(((((.((((.....))))..))))).....((((((((((....))))))((((......))))...-((((((........-)))))).)))). ( -25.30)
>consensus
ACCCAGCUGAAGAAGUCCUUCUUGUUGGUCUGCCAAAGCUCCUUAACGGGAGCAAGAUCAAUCUGUUUGAAAGGAAAAGUAUAUAAUUAGAUACAUUU
..(((((.((((.....))))..))))).........(((((......)))))............................................. (-17.45 = -16.70 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:38 2006