| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,229,112 – 11,229,206 |
| Length | 94 |
| Max. P | 0.939171 |
| Location | 11,229,112 – 11,229,206 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 73.89 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -11.99 |
| Energy contribution | -12.68 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11229112 94 + 27905053 CAAUGUCAAAUAUUAA----ACUAAAGUUAUCUAGUUAACUUU--CAAACUUACCUGUUUAAGGGUGACCUCAAAUUUGGGGUUACCCAAGCGCAGCAAU ................----...(((((((......)))))))--.........((((....(((((((((((....)))))))))))....)))).... ( -25.20) >DroSec_CAF1 363 94 + 1 CAAGGUCAAAUAUUAA----AUCAAUGUUAUCUAUUUAACUUU--AAAACAUACCUGUUUAAGGGUGACCUCAAAUUUGGGGUUACCCAAGCGCAGCAAU .(((((.(((((.(((----.......)))..))))).)))))--.........((((....(((((((((((....)))))))))))....)))).... ( -23.60) >DroSim_CAF1 1566 94 + 1 CAAGGUCAAAUAUUAA----AUCAAUGUUAUCUAUUUAACUUU--AAGACUUACCUGUUUAAGGGUGACCUCAAAUUUGGGGUUACCCAAGCGCAGCAAU ..(((((....(((..----...)))((((......))))...--..)))))..((((....(((((((((((....)))))))))))....)))).... ( -24.90) >DroEre_CAF1 363 94 + 1 GGAGCUCAACUAUUAA----AUCAAAGUUAUUUAUAUAACCUU--AAUACGUACCUGUUUCAGGGCGACCUCGAAUUUGGGAUUGCCCAGGCGCAGCAAU ...(((..........----......(((((....)))))...--.....(..(((......((((((.((((....)))).)))))))))..))))... ( -20.10) >DroYak_CAF1 1633 98 + 1 CAAGGCCAACCAUUAACUAUAUAACUUUUAUUUAUAUAAGGUU--AAAACGUACCUGCUUUAGGGUAACUUCAAACUUGGGAUUGCCCAGGCGCAGCAGU ....(((..........(((((((.......)))))))((((.--.......))))......((((((..(((....)))..)))))).)))........ ( -20.40) >DroAna_CAF1 372 96 + 1 GGAAAUAC-ACAUUAAA---CUUAAAAUCAAUAAUGGAGGCUCUCUUGUCCUACCUUUUUCAAGGCCACUUCUAUCUUGGGAUUUCCCAGGCGCAGCAAA ........-........---.............(((((((...(((((............)))))...)))))))((((((....))))))......... ( -16.30) >consensus CAAGGUCAAAUAUUAA____AUCAAAGUUAUCUAUUUAACUUU__AAAACGUACCUGUUUAAGGGUGACCUCAAAUUUGGGAUUACCCAAGCGCAGCAAU ......................................................((((...(((....)))....((((((....)))))).)))).... (-11.99 = -12.68 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:37 2006