| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,228,838 – 11,228,958 |
| Length | 120 |
| Max. P | 0.739971 |
| Location | 11,228,838 – 11,228,958 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.50 |
| Mean single sequence MFE | -43.23 |
| Consensus MFE | -20.05 |
| Energy contribution | -20.92 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11228838 120 + 27905053 CCCAUCACGGGCAGCAUCUGCUGCACUUUGAGGCUCAUGUUCUGCAGGAUUAGCAGGACAUCGUGGCUGGCCAUCUCCUUGGCCACCGAUAUCAGCAUCUCACUGAAGGUGGCAUCGAAC .(((((.((((((((....))))).......((((((((((((((.......))))))))).).))))(((((......))))).)))...((((.......)))).)))))........ ( -46.70) >DroVir_CAF1 59 120 + 1 CCGGUGACGGGCAGCAUCUGUUGCUGCUUGAGGCUCAUGUGCUGCAGCACUAGCAGCACCUUGUCCCUGGCCAGCUCCUUGGCCACGGCCAUUAGCAUUUCAACAAAGGUGGCAUCGAAC (((....)))((((((.....))))))((((.((.((((((((((.......)))))))..((.((.(((((((....))))))).)).)).................))))).)))).. ( -48.70) >DroPse_CAF1 83 120 + 1 CCAUUCACUGGCAGCAUUUCCUGCACCUUCAAGCUCAUGUUCUGAAGGAUCAACAGCACAUCGUUCUCGGCCAUCUCCUUGCUGACUGCCGUCAGCAUCUCUGUGAAGGUGGCAUCGAAC .......(((((((......)))).(((((((((....))).)))))).....)))......((((...(((((((...(((((((....)))))))((.....)))))))))...)))) ( -39.70) >DroMoj_CAF1 53 120 + 1 CUGGUGACGGGCAGCAACUGCUGCUGCUUGAGCGACAUGUGCUGCAGCACCAGCACCACAUUGUCGUUGGCCAGCUCCUUGGCCACGGCGAUCAGCAUCUCCACAAAGGUCGCGUCGAAC (((....)))((((((.....))))))(((((((((..((((((......))))))...((((((((.((((((....))))))))))))))................))))).)))).. ( -51.00) >DroAna_CAF1 98 120 + 1 CUGAUCACCGGCAGCAUCUGUUGCACUUUAAGACUCAUGUUCUGCAGGAUCAGCAGGACCUCGUUGGAGCCCAUUUCCUUGGCGACGGCAAUCAGCAUUUCACUGAAGGUGGCGUCGAAC .......(((((.(((.....)))..............(((((((.......)))))))...)))))...(((......)))(((((.((.((((.......))))...)).)))))... ( -34.10) >DroPer_CAF1 65 120 + 1 CCAUUCACUGGCAGCAUUUCCUGCACCUUCAAGCUCAUGUUCUGGAGGAUCAACAGCACAUCGUUCUCGGCCAUCUCCUUGCUGACUGCCGUCAGCAUCUCUGUGAAGGUGGCAUCGAAC .......(((((((......)))).(((((((((....))).)))))).....)))......((((...(((((((...(((((((....)))))))((.....)))))))))...)))) ( -39.20) >consensus CCGAUCACGGGCAGCAUCUGCUGCACCUUGAGGCUCAUGUUCUGCAGGAUCAGCAGCACAUCGUUCUUGGCCAUCUCCUUGGCCACGGCCAUCAGCAUCUCAAUGAAGGUGGCAUCGAAC ..........(((((....)))))..............(((((((.......))))))).(((......(((((((..((((.....((.....))......)))))))))))..))).. (-20.05 = -20.92 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:36 2006