Locus 4114

Sequence ID 3R_DroMel_CAF1
Location 11,227,774 – 11,227,886
Length 112
Max. P 0.781626
window6594

overview

Window 4

Location 11,227,774 – 11,227,886
Length 112
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.76
Mean single sequence MFE -32.72
Consensus MFE -26.34
Energy contribution -26.34
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.59
Structure conservation index 0.80
SVM decision value 0.56
SVM RNA-class probability 0.781626
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11227774 112 - 27905053
UUAACGGCUUCGGUGGAUGCCGAAGUUAGGCUUGUAGAUUGUAAUUGUAGUUCCGAUGUGGCUGAAUAAUAAUACAGUGACUUGAUUGU--------AAGAUUUAAAUCAGUUACGUGGG
.....(((((((((....))))))))).........................((.((((((((((..(((..((((((......)))))--------)..)))....)))))))))).)) ( -31.70)
>DroSim_CAF1 294 112 - 1
UAAACGGCUUCGGUGGAUGCCGAAGUUAGGCUUGUAGAUUGUAAUUGUAGUUCCGAUGUGGCUGAAUAAUAAUACAGUGACUUGAUUGU--------AAGAUUUAAAUCAGUUACGUGGG
.....(((((((((....))))))))).........................((.((((((((((..(((..((((((......)))))--------)..)))....)))))))))).)) ( -31.70)
>DroYak_CAF1 286 117 - 1
AGAACGGCUUCGGUGGAUGCCGAAGUUAGGCUUGUAGAUUGUAAUUGUCGUUCCGAUGUGGCUGAAU---AAUACAGUGACUUGAUUGUAAGAUUGUAAGAUUUAAAUCAGUUACGUGGG
.(((((((((((((....))))))))).(((...............)))))))(.((((((((((..---..((((((......))))))(((((....)))))...)))))))))).). ( -34.76)
>consensus
UAAACGGCUUCGGUGGAUGCCGAAGUUAGGCUUGUAGAUUGUAAUUGUAGUUCCGAUGUGGCUGAAUAAUAAUACAGUGACUUGAUUGU________AAGAUUUAAAUCAGUUACGUGGG
.....(((((((((....))))))))).........................((.((((((((((........(((((......)))))..................)))))))))).)) (-26.34 = -26.34 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:35 2006