Locus 411

Sequence ID 3R_DroMel_CAF1
Location 1,532,033 – 1,532,127
Length 94
Max. P 0.549798
window673

overview

Window 3

Location 1,532,033 – 1,532,127
Length 94
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 89.90
Mean single sequence MFE -30.75
Consensus MFE -24.09
Energy contribution -24.65
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.47
Structure conservation index 0.78
SVM decision value 0.03
SVM RNA-class probability 0.549798
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1532033 94 + 27905053
CGAGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACCGUGAGUCACCACCAAGUAUCCCAGUUUUAUCUCGGUUUACUGGUGACUUAUU-----
...((.(((.....))).)).((((((.......))))))..(((((((((((....(((..((((......)).))..)))))))))))))).----- ( -29.00)
>DroSec_CAF1 33611 99 + 1
CGGGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACUGUGAGUCACCGCCAAGUAUCCCAGUUUUAUCUCGGUUUGCGGGUGACUUAUUGCCCC
.((((((((.....))).(((((((((.......)))))).)))((((((((.....(((..((((......)).))..))).))))))))..))))). ( -34.10)
>DroSim_CAF1 31873 99 + 1
CGGGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACCGUGAGUCACCGCCAAGUAUCCCAGUUUUAUCUCGGUUUGCGGGUGACUUAUUGCCCC
.((((((((.....)))((..((((((.......))))))))((((((((((.....(((..((((......)).))..))).))))))))))))))). ( -35.50)
>DroEre_CAF1 33044 94 + 1
--AGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACUGUGAGUCAC---GAAGUAUCCCAGUUUUAUCUCGCUACGCGGGUGACUUAUUGCCUC
--....(((.....)))((((((((((.......))))))..(((((((((---((....))...........((((...))))))))))))))))).. ( -24.40)
>consensus
CGAGCAGACAUUGCGUCGGCAUGAGCACUGAACAUGUUCACCGUGAGUCACCGCCAAGUAUCCCAGUUUUAUCUCGGUUUGCGGGUGACUUAUUGCCCC
...((.(((.....))).)).((((((.......))))))..((((((((((.....(((..((((......)).))..))).))))))))))...... (-24.09 = -24.65 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:32 2006