Locus 4103

Sequence ID 3R_DroMel_CAF1
Location 11,204,785 – 11,204,877
Length 92
Max. P 0.907091
window6570

overview

Window 0

Location 11,204,785 – 11,204,877
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 87.07
Mean single sequence MFE -25.14
Consensus MFE -20.96
Energy contribution -19.56
Covariance contribution -1.40
Combinations/Pair 1.42
Mean z-score -1.87
Structure conservation index 0.83
SVM decision value 1.05
SVM RNA-class probability 0.907091
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11204785 92 - 27905053
AGAGAAUGAGUUCGCGCAUGAGCAGAGGACACUUACUGUUAACAGAGCUGUUACCGUUAAGCUACUCUGCUAAUUGUUAACAUUUCACACUA
...(((...(((.(((....(((((((....((((.((.(((((....))))).)).))))...)))))))...))).)))..)))...... ( -22.80)
>DroSec_CAF1 6887 92 - 1
AGAGAAUGAGUUCGCGCAUGUGCAGAGGACACGUACUGUUAACAGAGCUGUUACCGUUACGCUACUCUGCUAAUUGUUAACAUUUCACACUA
...(((...(((.(((.....((((((....((((.((.(((((....))))).)).))))...))))))....))).)))..)))...... ( -22.40)
>DroSim_CAF1 7102 92 - 1
AGAAAAUGAGUUCGCGCAUGUGCAGAGGACACGUACCGUUAACAGAGCUGUUACCGUUACGCUACUCUGCAAAGUGUUAACAUUGCACACUA
.........(((.((((...(((((((....((((.((.(((((....))))).)).))))...)))))))..)))).)))........... ( -28.60)
>DroEre_CAF1 11983 88 - 1
AGAGAACGAGUUCACGCAUGUGCAGAGAAUAUGUACUGUUAGCAGAGCUAUUACUGUUGUGCUGCUCUGUUAAGCGUUAACAUUUCAC----
...(((...(((.((((..(((((.......)))))..((((((((((...(((....)))..)))))))))))))).)))..)))..---- ( -28.30)
>DroYak_CAF1 7270 92 - 1
AGAGAACGAGUUCGCGCAUGUGCAGAGGAUAUGUACUGUUAACAGAGCUGUUACCGUUAUGCCACUCUGUUAAGCGUUAACAUUUCACAAUA
...(((...(((.((((..(((((.......)))))..(((((((((..((.........))..))))))))))))).)))..)))...... ( -23.60)
>consensus
AGAGAAUGAGUUCGCGCAUGUGCAGAGGACACGUACUGUUAACAGAGCUGUUACCGUUACGCUACUCUGCUAAGUGUUAACAUUUCACACUA
.........(((.((((....((((((....((((.((.(((((....))))).)).))))...))))))...)))).)))........... (-20.96 = -19.56 +  -1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:11 2006