| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,204,612 – 11,204,705 |
| Length | 93 |
| Max. P | 0.848363 |
| Location | 11,204,612 – 11,204,705 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.04 |
| Mean single sequence MFE | -16.84 |
| Consensus MFE | -15.49 |
| Energy contribution | -15.38 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11204612 93 + 27905053 UGUGUACUUUUACAAC--UGACAUCAACAAAGGCUUCUUGGCCACAUCGACUUCAAUUGCAAAAUGCUUGCAAUGCGCUUCAUCAUAAUUAAAAA .((((...........--(((..((......((((....)))).....))..)))(((((((.....)))))))))))................. ( -15.30) >DroSec_CAF1 6714 93 + 1 UGUGUACUUUUACAAC--UCACAUCAACAAAGGCCUCUCGGCCACAUCGACUUCAAUUGCGAAAUGCUUGCAAUGCGCUUCAUCAUAAUUAAAAA .((((...........--.............((((....))))............(((((((.....)))))))))))................. ( -16.70) >DroSim_CAF1 6932 90 + 1 UGUGUACUUUUACAAC--UCACAUCAACAAAGGCCUCUCGGCCACAUCGACUUCAAUUGCGAAAUGCUUGCAAUGCGCUUC---AUAAUUAAAAA .((((...........--.............((((....))))............(((((((.....)))))))))))...---........... ( -16.70) >DroEre_CAF1 11813 92 + 1 UGUGUGCUUUUACAAC--UCACAUCAACAAAGGCCUCUCGGCCACAUCGCCUUCAAUUGCGAAAUGCUUGCAAUGCGCUUCAUCAUAAUUAA-AA ...((((.........--.............((((....))))............(((((((.....)))))))))))..............-.. ( -18.40) >DroYak_CAF1 7097 93 + 1 CGUGUGCUUUUACAAC--UUACAUCCAAAAAGGCCUCUCGGCCACAUCGACUUCAAUUGCGAAAUGCUUGCAAUGCGCUUCAUCAUAAUUAAAAA ...((((.........--.............((((....))))............(((((((.....)))))))))))................. ( -18.40) >DroAna_CAF1 7247 91 + 1 UGUGUG----UAAAAUUAUGAUAAUGACAAAGGUCUUUCGCCCACAUCUACUUCAAUUGCGAAAUGCUUGCAAUGCGCUUCAUCAUAAUUAAAAA ......----...(((((((((........((((.((((((.................)))))).))))((.....))...)))))))))..... ( -15.53) >consensus UGUGUACUUUUACAAC__UCACAUCAACAAAGGCCUCUCGGCCACAUCGACUUCAAUUGCGAAAUGCUUGCAAUGCGCUUCAUCAUAAUUAAAAA .((((..........................((((....))))............(((((((.....)))))))))))................. (-15.49 = -15.38 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:10 2006