Locus 4095

Sequence ID 3R_DroMel_CAF1
Location 11,187,216 – 11,187,328
Length 112
Max. P 0.788376
window6557

overview

Window 7

Location 11,187,216 – 11,187,328
Length 112
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.10
Mean single sequence MFE -29.87
Consensus MFE -19.36
Energy contribution -19.67
Covariance contribution 0.31
Combinations/Pair 1.38
Mean z-score -1.49
Structure conservation index 0.65
SVM decision value 0.58
SVM RNA-class probability 0.788376
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11187216 112 - 27905053
----ACAAAUA-AUUA--AAUUCCAGCCCUAAGGCAAUGCAUGAUCCGGUCAAAAAGUCGGCUCACUUGACCGCUGGCUCCACCAGCACAGCGGAGAAGCUGUGCUUCGACAAGAAUGA
----.......-....--.......(((....)))......(((.((((........)))).)))((((.(((((((((.....))).)))))).(((((...)))))..))))..... ( -32.80)
>DroGri_CAF1 21379 109 - 1
AUACACAAAUAUAUUAAGAAUUCGAGC----ACGCAAUGCACGAGCCAGCGAGAAAGCCA-UC--CGUAG---CUGGUGGGUCGAGCACGGCAGAGAAGCUGUGCUUUGAUAAAAAUGA
.....................(((.((----(.....))).)))((((((..((......-))--....)---)))))..((((((((((((......))))))).)))))........ ( -30.30)
>DroSec_CAF1 18510 112 - 1
----ACAAAUA-AUUA--AAUUCCAGCCCUAAGGCAAUGCAUGAUCCGGUCAAGAAGUCGGCUCACUUGACCGCUGGCUCCACCAGCACAGCGGAGAAGCUGUGCUUCGACAAGAAUGA
----.......-....--...(((.(((....)))...((.((....(((((((.((....))..)))))))(((((.....))))).)))))))(((((...)))))........... ( -34.30)
>DroEre_CAF1 17496 112 - 1
----AAAAACA-AUUA--AAUUACAGCCCGAAGGCAAUGCAUGAUCCGGGCAAGAAGUCGGCUCACUUGACCGCCGGUUCCACCAGCACAGCGGAGAAGCUGUGCUUCGACAAGAAUGA
----.......-....--.......(((((....((.....))...))))).....((((((((....))..)))((.....))((((((((......))))))))..)))........ ( -32.70)
>DroYak_CAF1 17318 112 - 1
----ACAAAUA-AUUU--AAUUCCAGCUCUAAGGCAAUGCAUGAUCCGGUCAAGAAGUCAGCUCACUUGACCGCUGGCUCCACCAGCACAGCGGAGAAACUGUGCUUCGACAAGAAUGA
----.......-....--.((((..(((....)))...(((((.((((((((((.((....))..)))))))(((((((.....))).))))))).....)))))........)))).. ( -29.80)
>DroAna_CAF1 17532 108 - 1
----UUAUUAA-AUUU--AAUUGACGACCUCA-GCAAUGCAUGACACCGCCAUCAAGCCGGUUCACCUAC---CUGGCUCCACCAGCACCGCCGAAAAGUUGUGCUUUGACAAGAAUGA
----(((((..-..((--((...(((((.((.-((..(((.(((........)))(((((((......))---).))))......)))..)).))...)))))...))))....))))) ( -19.30)
>consensus
____ACAAAUA_AUUA__AAUUCCAGCCCUAAGGCAAUGCAUGAUCCGGUCAAGAAGUCGGCUCACUUGACCGCUGGCUCCACCAGCACAGCGGAGAAGCUGUGCUUCGACAAGAAUGA
.........................(((....)))...........(((......(((((((..........))))))).....((((((((......))))))))))).......... (-19.36 = -19.67 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:59 2006