| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,526,132 – 1,526,228 |
| Length | 96 |
| Max. P | 0.622870 |
| Location | 1,526,132 – 1,526,228 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 68.37 |
| Mean single sequence MFE | -25.81 |
| Consensus MFE | -7.58 |
| Energy contribution | -7.52 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.29 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1526132 96 - 27905053 AAUUUGGCUCUGCC--ACAAA--------GGACCAAGAACCGAGUGGCGGC--CCAAACUAAAAA-CCAAGUGAAGGGGAUGGGGAUGGGACGGACUCUAAUCUAAUCA ..(((((..(((((--((...--------((........))..))))))).--))))).......-((........))(((..((((.(((.....))).)))).))). ( -24.60) >DroPse_CAF1 25581 97 - 1 AAGUUUGCCAAGCCUAACAAAUUUCAAUC--GGCUAGUACCGAAAGGCUGAAAUCAGUCUAAAAAGCCAGCCAGCAGAGCUGCGAAU----------AAAAUCGAAUCA ..((((((..(((((............((--((......)))).((((((....)))))).....((......)))).)))))))))----------............ ( -20.80) >DroSec_CAF1 28002 96 - 1 CAUUUGGCGCUGCC--ACAAA--------GGACCAAGAAGCGAGUGGCGGC--CCAAACUAAAAA-CCAAGUGGUGGGGAUGGGAAUGGGACGGACUCCAAUCUAAUCA ..(((((.((((((--((...--------..............))))))))--)))))((....(-((....))).))(((.(((.((((......)))).))).))). ( -30.73) >DroSim_CAF1 26274 96 - 1 AAUUUGGCGCUGCC--ACAAA--------GGACCAAGAACCGAGUGGCGGC--CCAAACUAAAAA-CCAAGUGGUGGGGAUGGGAAUGGGACGGACUCCAAUCUAAUCA ..(((((.((((((--((...--------((........))..))))))))--)))))((....(-((....))).))(((.(((.((((......)))).))).))). ( -33.90) >DroPer_CAF1 26831 89 - 1 AAGUUUGCCAAGCCUAACAAA----------GCCUAGUACCGAACGGCUGAAAUCAGUCUAAAAAGCCAGGCAGCAGAGCUGCGAAU----------AUAAUCGAAUCA ..((((((..(((((......----------((((.((.......(((((....)))))......)).))))...)).)))))))))----------............ ( -19.02) >consensus AAUUUGGCCCUGCC__ACAAA________GGACCAAGAACCGAGUGGCGGC__CCAAACUAAAAA_CCAAGUGGCGGGGAUGGGAAUGGGACGGACUCCAAUCUAAUCA ..(((((..(((((...............................)))))...)))))....................(((.(((.((((......)))).))).))). ( -7.58 = -7.52 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:29 2006