Locus 4089

Sequence ID 3R_DroMel_CAF1
Location 11,155,135 – 11,155,255
Length 120
Max. P 0.614169
window6550

overview

Window 0

Location 11,155,135 – 11,155,255
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -48.27
Consensus MFE -44.91
Energy contribution -45.03
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.66
Structure conservation index 0.93
SVM decision value 0.16
SVM RNA-class probability 0.614169
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11155135 120 - 27905053
ACUCGUCGAUCUUGGUCUUCAUUCCGCCAUAGAUGCGAUUGGACAGGAUGUUGCCGCAUUGUCCUGGCAGCGGCAGAAGGCUGUUGCUGGUUACAUUGGGCUUGGGCGGUGGCGUCGUCU
.((.((((((((((((.........)))).)))).)))).))....(((((..((((...((((.(.(((((((((....))))))))).)......))))....))))..))))).... ( -48.80)
>DroSim_CAF1 8041 120 - 1
ACUCGUCGAUCUUGGUCUUCAUUCCGCCGUAAAUGCGAUUGGACAGGAUGUUGCCGCAUUGUCCUGGUAGCGGCAGAAUGCUGUUGCUGGUUACAUUGGGCUUGGGCGGCGGCGGCGUCU
....((((((....))).......(((.......)))....))).((((((((((((...((((.(((((((((.....)))))))))((((......)))).)))).)))))))))))) ( -45.80)
>DroYak_CAF1 8058 120 - 1
ACUCGUCGAUCUUGGUCUUCAUUCCGCCGUAGAUGCGAUUGGACAGGAUGUUGCCGCAUUGUCCUGGCAGCGGCAGCAGGUUGUUGCUGGUUACAUUUGGCUUGGGCGGCGGAGGCGUCU
...(((((((....))).....((((((.((((((..((..(((((..(((((((((..(((....))))))))))))..))))..)..))..))))))((....))))))))))))... ( -50.20)
>consensus
ACUCGUCGAUCUUGGUCUUCAUUCCGCCGUAGAUGCGAUUGGACAGGAUGUUGCCGCAUUGUCCUGGCAGCGGCAGAAGGCUGUUGCUGGUUACAUUGGGCUUGGGCGGCGGCGGCGUCU
.((.((((((((((((.........)))).)))).)))).))...((((((((((((...((((.(((((((((((....))))))))(....).....))).)))).)))))))))))) (-44.91 = -45.03 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:52 2006