Locus 4086

Sequence ID 3R_DroMel_CAF1
Location 11,148,933 – 11,149,033
Length 100
Max. P 0.560749
window6546

overview

Window 6

Location 11,148,933 – 11,149,033
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 95.17
Mean single sequence MFE -29.45
Consensus MFE -27.26
Energy contribution -27.95
Covariance contribution 0.69
Combinations/Pair 1.07
Mean z-score -1.44
Structure conservation index 0.93
SVM decision value 0.05
SVM RNA-class probability 0.560749
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11148933 100 + 27905053
CCCCUGUUAGUGCUAGUGCCAGCAGCGGCAGCAAGAAGGAGAAGCACAAAAAGUCCAAGGAGAAAUCCUCUGGGAAGGAUGAGAAGCGCCAACGGGAGGC
((((((((.(((((..((((......))))................((.....((((((((....)))).)))).....))...))))).)))))).)). ( -32.90)
>DroSec_CAF1 1852 100 + 1
UCCCUGUUAGUGCUAGUGCCAGCAGCGGCAGCAAGAAGGAGAAACACAAAAAGUCCAAGGAUAAGUCCUCUGGGAAGGAUGAGAAGCGCCAACGGGAGGC
..((((((.(((((..((((......))))................((.....((((((((....)))).)))).....))...))))).)))))).... ( -28.60)
>DroSim_CAF1 1848 100 + 1
CCCCUGUUAGUGCUAGUGCCAGCAGCGGCAGCAAGAAGGAGAAACACAAAAAGUCCAAGGAUAAGUCCUCUGGGAAGGAUGAGAAGCGCCAACGGGAGGC
((((((((.(((((..((((......))))................((.....((((((((....)))).)))).....))...))))).)))))).)). ( -30.40)
>DroEre_CAF1 1846 100 + 1
CCCCUGUUAAUGCUAGUGCUAGCAGCGGCAGCAAGAAGGAGAAGCACAAAAAGUCCAAGGAGAAGUCCUCUGGGAAAGAUGAUAAGCGCCAACGGGAGAC
..((((((..(((((....)))))..(((.((.....(........)......((((((((....)))).))))...........))))))))))).... ( -25.90)
>consensus
CCCCUGUUAGUGCUAGUGCCAGCAGCGGCAGCAAGAAGGAGAAACACAAAAAGUCCAAGGAGAAGUCCUCUGGGAAGGAUGAGAAGCGCCAACGGGAGGC
((((((((.(((((..((((......))))................((.....((((((((....)))).)))).....))...))))).)))))).)). (-27.26 = -27.95 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:48 2006