| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,131,033 – 11,131,129 |
| Length | 96 |
| Max. P | 0.562598 |
| Location | 11,131,033 – 11,131,129 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 76.98 |
| Mean single sequence MFE | -39.65 |
| Consensus MFE | -25.68 |
| Energy contribution | -27.82 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11131033 96 - 27905053 UGCGCCUGCCUCCUCGCCGAGGGCAGCCAGCUCCUCGGCCCUAGCCUUCGCCUCGGCCUCGGCAAUGGCAGCGGCCUCC--AG-GGCGGCCUUCUCCUC ...((.((((.....(((((((((.....)).)))))))....(((...((....))...)))...))))))((((.(.--..-.).))))........ ( -42.00) >DroSec_CAF1 41444 96 - 1 UGCGCCUGCCUCCUCGCCGAGGGCAGCCAGCUCCUCGGCCCUAGCCUUCGCCUCGGCCUCGGCAAUGGCAGCGGCUUCC--AG-GGCGGCCUUCUCCUC ...(((.((((....(((((((((.....)).)))))))...((((...(((...((....))...)))...))))...--.)-))))))......... ( -41.10) >DroEre_CAF1 42070 96 - 1 UGCGGCUGCCUCCUCGCCGAGGGCGGCCAGCUCCUCGGCCCUAGCCUUCGCCUCAGCCGCGGCAAUAGCAGCGGCCUCC--AG-GGCGGCCUUUUCCUC ...((((((((....(.(((((((((((........))))...))))))).)...(((((.((....)).)))))....--.)-)))))))........ ( -46.20) >DroYak_CAF1 42839 96 - 1 UCCACCUGCCUCCUCGCGGAGGGCGGCCAGCUCCUCGGCCCUAGCCUUCGCCUCGGCCUCGGCAAUGGCAGCGGCCUCC--AG-GGCGGCCUUCUCCUC .......((......))((((((.((((.((.(((.((((((.(((...(((........)))...))))).))))...--))-))))))))))))).. ( -41.50) >DroAna_CAF1 40854 94 - 1 --CUCCAGCAUCUUCACCCAGAGCGGCCAGUUCCUCGGCCCGGGCCUUGGCCUCAGCCUCGGCGGCGGCAGCAGCUUCC--AA-GGCGGCAAUCUCCUC --..((.((.(((......)))))((((((......(((....)))))))))...((((.((.(((.......))).))--.)-))))).......... ( -30.50) >DroPer_CAF1 49250 84 - 1 AGCCUUUGCCUCC---------GCGGCCUGCGCCU------UGGCCUCCGCAACGGCCUGGGCCUUGGCCUCGGCCUCCGCAAUGCGGGCCAGAUCCUC .......((....---------))(((((((((..------..))....((...((((.((((....)))).))))...))...)))))))........ ( -36.60) >consensus UGCGCCUGCCUCCUCGCCGAGGGCGGCCAGCUCCUCGGCCCUAGCCUUCGCCUCGGCCUCGGCAAUGGCAGCGGCCUCC__AG_GGCGGCCUUCUCCUC .....(((((.....(((((((((.....)).)))))))....(((...((....))...)))...))))).((((.((.....)).))))........ (-25.68 = -27.82 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:44 2006