Locus 4080

Sequence ID 3R_DroMel_CAF1
Location 11,120,315 – 11,120,414
Length 99
Max. P 0.820315
window6537

overview

Window 7

Location 11,120,315 – 11,120,414
Length 99
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 91.86
Mean single sequence MFE -21.68
Consensus MFE -18.50
Energy contribution -18.90
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.85
SVM decision value 0.68
SVM RNA-class probability 0.820315
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11120315 99 - 27905053
CCCAA-AAACGCCCUUAAGCGAAGGAA-----UGAUUGCGUGUUGCUUUGCUGGCUAAAUGCAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC
.....-............((((.(...-----(((((((((...(((.....)))...)))))))))...))))).......(((.(((....))).)))..... ( -22.10)
>DroSec_CAF1 30783 104 - 1
CCAAA-AAACGCCCUAAAGCACAGGAAUCAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC
.....-.(((.......(((((.(.((((....)))).))))))((((((.((((..(((((.....))))).)))).)))))).........)))......... ( -23.10)
>DroSim_CAF1 29928 104 - 1
CCCCU-AAACGCCCUAAAGCACAGGAAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC
..(((-....((......))..))).......(((.....((((((((((.((((..(((((.....))))).)))).))))))..)))).....)))....... ( -21.40)
>DroEre_CAF1 31247 104 - 1
CCCAA-AGACGCCCUAAAGCACCGAUAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC
.....-.(((.......(((((((((........)))).)))))((((((.((((..(((((.....))))).)))).)))))).........)))......... ( -21.60)
>DroYak_CAF1 31735 105 - 1
CCCAAAAAACGCCCUAAAGCACCGGAAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCAAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC
..........((......))............(((.....((((((((((.((((..(((((.....))))).)))).))))))..)))).....)))....... ( -20.20)
>consensus
CCCAA_AAACGCCCUAAAGCACAGGAAUGAAAUGAUUGCGUGUUGCUUUGCUGGCCAAGUGUAAUCGAUACUCGCCAUCAAAGUUAAACAAAAGUUCAACAACAC
..........((......))............(((.....((((((((((.((((..(((((.....))))).)))).))))))..)))).....)))....... (-18.50 = -18.90 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:39 2006