| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,091,605 – 11,091,714 |
| Length | 109 |
| Max. P | 0.518209 |
| Location | 11,091,605 – 11,091,714 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.30 |
| Mean single sequence MFE | -42.98 |
| Consensus MFE | -32.49 |
| Energy contribution | -34.05 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11091605 109 - 27905053 CAGACCGAACACCUGCACUGGUGGCUUCACCGUCGCCUGGGCGGCAGCGGAGCUGAGGGUGCGGCUCUGCGGGAUAAGCAAACAAGAGCACUUGGUAAGUUUUUCGGCU .((.(((((((((......))))((((..(((((((....))))).(((((((((......)))))))))))...))))...((((....))))........))))))) ( -46.20) >DroSec_CAF1 2166 109 - 1 CAGACCGAACACCUGCACUGGUGGCUUCACCGUCGCCUGGGCGGCAGCGGAGCUGAGGGUGCGGCUCUGCGGGAUAAGCAAACGAGACCACUUGGUAAGUUUUUCGGCU .((.(((((((((......))))((((..(((((((....))))).(((((((((......)))))))))))...))))((((...(((....)))..))))))))))) ( -48.60) >DroSim_CAF1 2170 109 - 1 CAGACCGAACACCUGCACUGGUGGCUUCACCGUCGCCUGGGCGGCAGCGGAGCUGAGGGUGCGGCUCUGCGGGAUAAUCAAACAAGAGCACUUGUUAAGUUUUUCGGCU .((.(((((((((......))))((((..(((((((....))))).(((((((((......)))))))))))........((((((....))))))))))..))))))) ( -44.70) >DroEre_CAF1 2134 109 - 1 CAGUCCGAACACCUGCACUGGUGGCUUCACCGUCGCCUGGGCGGCAGCGGAGCUGAGGGUGCGGCUCUGCGGGAUUAGCAAAAGAAAGCACUUGGUGAGUUCUUCAACU .........((((......))))(((...(((((((....))))).(((((((((......)))))))))))....)))..(((((..(((...)))..)))))..... ( -42.80) >DroYak_CAF1 2227 109 - 1 CAGGCCGAACACCUGCACUGGUGGCUUCACCGUCGCCUGGGCGGCAGCGGAGCUGAGGGUGCGGCUCUGCGGGAUUAGCAAAAGAGAACACUUGGUGAGUUCUUUGACU .........((((......))))(((...(((((((....))))).(((((((((......)))))))))))....)))...(((((((.(.....).))))))).... ( -43.50) >DroAna_CAF1 2072 84 - 1 CAAUCCGAACACCUGGACUGGCGGCUUCACCGUCUGCUGGGUAGCAGCGGAGCUGAGAGCGCGGCUCUGUGGAAGA-------------------------UUUCGAAU ...(((....(((..(...(((((.....)))))..)..)))....(((((((((......))))))))))))...-------------------------........ ( -32.10) >consensus CAGACCGAACACCUGCACUGGUGGCUUCACCGUCGCCUGGGCGGCAGCGGAGCUGAGGGUGCGGCUCUGCGGGAUAAGCAAACGAGAGCACUUGGUAAGUUUUUCGACU .....((((((((......))))((((..(((((((....))))).(((((((((......)))))))))))...)))).......................))))... (-32.49 = -34.05 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:24 2006