Locus 407

Sequence ID 3R_DroMel_CAF1
Location 1,517,216 – 1,517,311
Length 95
Max. P 0.500000
window665

overview

Window 5

Location 1,517,216 – 1,517,311
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 83.51
Mean single sequence MFE -32.80
Consensus MFE -22.30
Energy contribution -23.55
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.50
Structure conservation index 0.68
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1517216 95 - 27905053
UAGUGUGUAUCCGCCAGGAAUAUAACGCAUACGCCGCGUGAGCCACCGAAGAGCUCGAGGACAGCGGGCUGGCGACGGCGAUGGCGAUGGGGAUG
.......(((((.(((.........(((...((((((((.((((........(((.......))).)))).))).)))))...))).)))))))) ( -33.90)
>DroSec_CAF1 18969 89 - 1
GAGGGUGUAUCCGCCAGGAAUAUAACGCAUACGCCGCGUGAGCCACGGAAGAGCUCGAGGACAGCGGGCUGGCGAUGGCGAUGGC------GAUG
...((((....))))..........(((...((((((((.((((.(....).(((.......))).)))).))).)))))...))------)... ( -34.00)
>DroSim_CAF1 17206 89 - 1
GAGGGUGUAUCCGCCAGGAAUAUAACGCAUACGCCGCGUGAGCCACGGAAGAGCUCGAGGACAGCGGGCUGGCGAUGGCGAUGGC------GAUG
...((((....))))..........(((...((((((((.((((.(....).(((.......))).)))).))).)))))...))------)... ( -34.00)
>DroYak_CAF1 16580 74 - 1
AAGGGUGUAUACGCCAGGAAUAUAACGCAUACGCCGCGUAAGCCACGGAAAAGCUCGUGGACAGCGGGGUGGCG---------------------
...((((....))))..........(((.(((.((((.....((((((......))))))...)))).))))))--------------------- ( -29.30)
>consensus
GAGGGUGUAUCCGCCAGGAAUAUAACGCAUACGCCGCGUGAGCCACGGAAGAGCUCGAGGACAGCGGGCUGGCGAUGGCGAUGGC______GAUG
...((((....))))..........(((...((((((....))........((((((.......))))))))))...)))............... (-22.30 = -23.55 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:25 2006