Locus 4067

Sequence ID 3R_DroMel_CAF1
Location 11,072,949 – 11,073,065
Length 116
Max. P 0.911542
window6517

overview

Window 7

Location 11,072,949 – 11,073,065
Length 116
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 77.45
Mean single sequence MFE -38.93
Consensus MFE -20.67
Energy contribution -21.15
Covariance contribution 0.48
Combinations/Pair 1.27
Mean z-score -2.23
Structure conservation index 0.53
SVM decision value 1.08
SVM RNA-class probability 0.911542
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11072949 116 + 27905053
AUUUACUUGCUAGAUGGGCUUAAUCCACCCAGGCAAAGUUGGGAUCCUUUUCGGGUUUCUGACCCA---UCACAGAGCCUAUCACCGGUAGCUCGCUGUUGUUGGAUCUGUACAGGCCA
........(((.(((((((((......(((((......))))).........(((((...))))).---.....))))))))).((..((((.....))))..)).........))).. ( -35.40)
>DroSec_CAF1 2857 116 + 1
AUUUCCUUGCUAGAUGGGCUUAAUCCACCCAGGCAAAGUUGGGAUCCUUUUCGGGCUUCUGACCCA---UCACAGAGCCUAUCACCGGUAGCUCGCUGUUGUUGGCUCUGUACAGGCCA
........(((.((((((.........(((((......))))).......((((....))))))))---))((((((((...((.((((.....)))).))..))))))))...))).. ( -39.00)
>DroSim_CAF1 2896 116 + 1
AUUUGCUUGCUAGAUGGGCUUAAUCCACCCAGGCAAAGUUGGGAUCCUUUUCGGGCUUCUGACCCA---UCACAGAGCCUAUCACCGGUAGCUCGCUGUUGUUGGCUCUGUACAGGCCA
....(((((...((((((.........(((((......))))).......((((....))))))))---))((((((((...((.((((.....)))).))..)))))))).))))).. ( -42.10)
>DroEre_CAF1 4332 114 + 1
AU-----UGCUAGAAAGGUCUAAUCAACCCAGGCAAAGUUGGGAUCCUUUUCCGGCUUGUGCGGUAGGUUCACAGAACCUUUCACCGGUAACUCGGUGUUGUUGGAUCUGUACAGGCCA
..-----.(((.(..((((((((.((((((((((((((((((((.....))))))))).)))(((((((((...))))))...))).....)).)).))))))))))))...).))).. ( -40.50)
>DroYak_CAF1 2882 114 + 1
GU-----UAUUAGAAAGGUCUAAUCAACCCAGGCAAAGUUGGGAUCCUUUUCCGGCUUUUGAGGUAGGUUCACAGAACCUAUCACCGGUAACUCGCUGUUGUUGGAUCGGUACAGGCCA
((-----(((((((....)))))).)))...(((((((((((((.....))))))))))((((((((((((...))))))))).((..((((.....))))..)).)))......))). ( -38.00)
>DroMoj_CAF1 3281 95 + 1
---------------GUGCCUAAUCGACCCAGGCAAAGUUGCCAUCCUUGUCCAGCUUGGC---------GACUCGGCUUAUCACCGGCAGCUCACUGUUGUUGGGUUUAUAGGUGCCC
---------------(..((((...(((((((((..((((((((..((.....))..))))---------))))..))))......((((((.....)))))))))))..))))..).. ( -38.60)
>consensus
AU_____UGCUAGAUGGGCCUAAUCCACCCAGGCAAAGUUGGGAUCCUUUUCCGGCUUCUGACCCA___UCACAGAGCCUAUCACCGGUAGCUCGCUGUUGUUGGAUCUGUACAGGCCA
............(((((((((......(((((......)))))..((......))...................))))))))).((..((((.....))))..)).............. (-20.67 = -21.15 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:19 2006