Locus 4061

Sequence ID 3R_DroMel_CAF1
Location 11,064,131 – 11,064,237
Length 106
Max. P 0.500000
window6509

overview

Window 9

Location 11,064,131 – 11,064,237
Length 106
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 81.58
Mean single sequence MFE -31.00
Consensus MFE -21.57
Energy contribution -22.10
Covariance contribution 0.53
Combinations/Pair 1.13
Mean z-score -1.26
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11064131 106 + 27905053
CUG-----------CUACUACGGUGCUUACUCACUUUCAGUUAGCCUUCGCAAGGCACAAUGAUGCAGCAGCUCCUUCAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAAGAAUAUU
..(-----------(.((....))))....((....(((....((((.....))))....)))(((.(((((((.(((...((((.....)))).))).)))))))))).))..... ( -31.50)
>DroSec_CAF1 7787 106 + 1
CUG-----------CUAUUACGGUGCUUACUCACUUUCAGUUAGCCUUCGCAAGGCACAAUGAUGCAGCAGCUCCUUCAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAAGAAUAUU
.((-----------(.((((..(((((((((.......)))..((....)).))))))..)))))))(((((((.(((...((((.....)))).))).)))))))........... ( -30.40)
>DroSim_CAF1 7786 106 + 1
CUG-----------UUAUUACAGUGCUUACUCACUUUCAGUUAGCCUUCGCAAGGCACAAUGAUGCAGCAGCUCCUUCAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAAGAAUAUU
(((-----------(....))))(((..........(((....((((.....))))....)))....(((((((.(((...((((.....)))).))).))))))))))........ ( -29.90)
>DroEre_CAF1 7805 106 + 1
AUA-----------GUAUUACAGAGCUUACUCACUUUCAGUCAGCCUGCGCAGGGCACAAUGAUGCAGCAGCUCCUUCAGAGCAAUCUCUUGGUGGAAUGAGCUGCGCAGGAAUAUG
...-----------(((((...(((....)))............((((((((...(.....).))).(((((((.(((..(.(((....))).).))).))))))))))))))))). ( -31.90)
>DroYak_CAF1 7817 106 + 1
CUA-----------GUAUUACGGAGCUUACUCACUUUCAGUUAGCCUGCGCAGGGCACAGUGAUACAGCAGCUCCUUUAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAGAAAUAUG
...-----------(((((((.(((....)))...........((((.....))))...))))))).(((((((.(((...((((.....)))).))).)))))))........... ( -32.50)
>DroPer_CAF1 8292 117 + 1
AUAGGGCAUGGAGUGUAUUAGAGGCCUAACAUACCCUCUCCCAGCCUUCGUCGGGCACAAUGAUACAGCAGCUCCUUAAGAGCAAUCUCCUGGUGAAACGAACUAAGGGAAAAGAUC
...(((...((.((((.((((....)))).))))))...))).((((.....))))..............((((.....))))..((((.((((.......)))).))))....... ( -29.80)
>consensus
CUA___________GUAUUACAGUGCUUACUCACUUUCAGUUAGCCUUCGCAAGGCACAAUGAUGCAGCAGCUCCUUCAGUGCUAUCUCUUGGUGGAAUGAGCUGCGCAAGAAUAUU
........................((..........(((....((((.....))))....)))....(((((((.(((...((((.....)))).))).)))))))))......... (-21.57 = -22.10 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:11 2006