Locus 4058

Sequence ID 3R_DroMel_CAF1
Location 11,049,157 – 11,049,262
Length 105
Max. P 0.598782
window6506

overview

Window 6

Location 11,049,157 – 11,049,262
Length 105
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 83.39
Mean single sequence MFE -32.78
Consensus MFE -20.95
Energy contribution -22.37
Covariance contribution 1.42
Combinations/Pair 1.11
Mean z-score -2.35
Structure conservation index 0.64
SVM decision value 0.13
SVM RNA-class probability 0.598782
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11049157 105 + 27905053
----AUCGUCCUUCAAGCCCAGGGCAAAGUCUUGGGCUUCCCCGCCAUUCCUGAAAAUCCGCACAUACGCGGACUUCGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA
----...(((((.((((((((((((...)))))))))))...(((((((((((((..(((((......))))).))))))...........)))))))..).))))).. ( -46.70)
>DroPse_CAF1 3160 109 + 1
ACUAAUCAUCUUUGAAACCCAAACUAAACUCCUGUGCCUCACCUCCCUUUCGAAAGAUUCGCACGUAGGCGGACUUGACGCCAAACUUCCAAAUGGCAAUGUAGGGCAA
.....(((....)))...................((((..((.......((....))(((((......)))))......((((..........))))...))..)))). ( -20.40)
>DroSec_CAF1 1 109 + 1
UCUAAUCGUCCUUUAAGCCCAGUGCAAAGUCUUGAGCCUCCCCGCCUUUCCUGAAGAUCCGCACAUACGCGGACUUCGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA
.......(((((....(((...((..((((.(((.((......))....(((((((.(((((......)))))))))))).))))))).))...))).....))))).. ( -34.50)
>DroSim_CAF1 1 108 + 1
-CUAAUCGUCCUUCAAGCCCAGGGCAAAAUCUUGGGCCUCCCCGCCUUUCCUGAAGAUCCGCACAUAAGCGGACUUCGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA
-......(((((.(..((((((((.....)))))))).....((((((((((((((.(((((......))))))))))))..........))).))))..).))))).. ( -42.90)
>DroYak_CAF1 1 108 + 1
-CUAAUCGUCCUUCAAGCCCGAGGUAAAAUCUUGGGCCUCCCCUCCCUUCCUGAAGAUCCGCACAUACGCGAACUUUGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA
-......(((((.(..(((((((((...))))))))).............(..(((...(((......)))..)))..)((((..........))))...).))))).. ( -31.80)
>DroPer_CAF1 3799 109 + 1
ACUAAUCAUCUUUGAAACCCAAACUAAACUCCUGUGCCUCACCUCCCUUUCGAAAGAUUCGCACGUAGGCGGACUUGACGCCAAACUUCCAAAUGGCAAUGUAGGGCAA
.....(((....)))...................((((..((.......((....))(((((......)))))......((((..........))))...))..)))). ( -20.40)
>consensus
_CUAAUCGUCCUUCAAGCCCAAGGCAAAAUCUUGGGCCUCCCCGCCCUUCCUGAAGAUCCGCACAUACGCGGACUUCGGGCCAAACUUCCAAAUGGCGACGUAGGGCAA
................((((..............................((((((.(((((......)))))))))))((((..........))))......)))).. (-20.95 = -22.37 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:07 2006