Locus 4056

Sequence ID 3R_DroMel_CAF1
Location 11,047,092 – 11,047,212
Length 120
Max. P 0.956940
window6499

overview

Window 9

Location 11,047,092 – 11,047,212
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -48.83
Consensus MFE -48.37
Energy contribution -48.70
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.99
SVM decision value 1.47
SVM RNA-class probability 0.956940
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11047092 120 - 27905053
CUCCUCAAUAUACAGCCAGGGGUGUAUUGGUCCACCCAGAAACGUGGGCCGUUUCAUGCCGUGCUCCAGAAAGGCCUUGAUGGCCGGCGCCAAGGUGCCACGCACCAGGUCCGUUACAGU
..............(((.((.(((...((((((((........))))))))...))).))((((........((((.....))))(((((....)))))..))))..))).......... ( -46.90)
>DroSec_CAF1 9862 120 - 1
CUCCUCAAUAUACAGCCAGGGGUGAAUUGGUCCACCCAGAAACGUGGGCCGUUUCAUGCCGUGCUCCAGAAAGGCCUUUAUGGCCGGCGCCAAGGUGCCACGCACCAGGUCCGUUACAGU
..............(((.((.(((((.((((((((........)))))))).))))).))((((........((((.....))))(((((....)))))..))))..))).......... ( -49.80)
>DroSim_CAF1 9880 120 - 1
CUCCUCAAUAUACAGCCAGGGGUGAAUUGGUCCACCCAGAAACGUGGGCCGUUUCAUGCCGUGCUCCAGAAAGGCCUUGAUGGCCGGCGCCAAGGUGCCACGCACCAGGUCCGUUACAGU
..............(((.((.(((((.((((((((........)))))))).))))).))((((........((((.....))))(((((....)))))..))))..))).......... ( -49.80)
>consensus
CUCCUCAAUAUACAGCCAGGGGUGAAUUGGUCCACCCAGAAACGUGGGCCGUUUCAUGCCGUGCUCCAGAAAGGCCUUGAUGGCCGGCGCCAAGGUGCCACGCACCAGGUCCGUUACAGU
..............(((.((.(((((.((((((((........)))))))).))))).))((((........((((.....))))(((((....)))))..))))..))).......... (-48.37 = -48.70 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:00 2006