Locus 4054

Sequence ID 3R_DroMel_CAF1
Location 11,046,292 – 11,046,412
Length 120
Max. P 0.669313
window6496

overview

Window 6

Location 11,046,292 – 11,046,412
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -34.00
Consensus MFE -34.00
Energy contribution -34.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 1.00
SVM decision value 0.29
SVM RNA-class probability 0.669313
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11046292 120 - 27905053
AAAUCUGUGCUGAGUUCUCGAGAUGCUUUAGAUCUUGCUCCUUCACCUUGAGCAUGCCCAGAGUCAACUGGAACAGCACGAUGGAGCCCUCGUAAAAGAACCAGUCCCAGAUACGCACAA
..(((((.((((.(((((((((..((((((.....(((((.........)))))(((((((......))))....)))...)))))).))))....)))))))))..)))))........ ( -34.00)
>DroSec_CAF1 9062 120 - 1
AAAUCUGUGCUGAGUUCUCGAGAUGCUUUAGAUCUUGCUCCUUCACCUUGAGCAUGCCCAGAGUCAACUGGAACAGCACGAUGGAGCCCUCGUAAAAGAACCAGUCCCAGAUACGCACAA
..(((((.((((.(((((((((..((((((.....(((((.........)))))(((((((......))))....)))...)))))).))))....)))))))))..)))))........ ( -34.00)
>DroSim_CAF1 9080 120 - 1
AAAUCUGUGCUGAGUUCUCGAGAUGCUUUAGAUCUUGCUCCUUCACCUUGAGCAUGCCCAGAGUCAACUGGAACAGCACGAUGGAGCCCUCGUAAAAGAACCAGUCCCAGAUACGCACAA
..(((((.((((.(((((((((..((((((.....(((((.........)))))(((((((......))))....)))...)))))).))))....)))))))))..)))))........ ( -34.00)
>consensus
AAAUCUGUGCUGAGUUCUCGAGAUGCUUUAGAUCUUGCUCCUUCACCUUGAGCAUGCCCAGAGUCAACUGGAACAGCACGAUGGAGCCCUCGUAAAAGAACCAGUCCCAGAUACGCACAA
..(((((.((((.(((((((((..((((((.....(((((.........)))))(((((((......))))....)))...)))))).))))....)))))))))..)))))........ (-34.00 = -34.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:57 2006