Locus 4048

Sequence ID 3R_DroMel_CAF1
Location 11,041,044 – 11,041,164
Length 120
Max. P 0.872505
window6482

overview

Window 2

Location 11,041,044 – 11,041,164
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -41.40
Consensus MFE -41.29
Energy contribution -41.07
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.86
Structure conservation index 1.00
SVM decision value 0.88
SVM RNA-class probability 0.872505
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11041044 120 - 27905053
CAUGAACUUGAAGAUCACCAAGGUGCAUGAGAAUCCCUACACGGAUCUCAUGUACGAGGUGCUCAACGAUCAGAAUCUGUGGGCCGUUUGCGGUCGCUCAGCGGGUAAGUUGGAUUCUCU
..(((..(((..((.((((...((((((((((.(((......)))))))))))))..)))).))..))))))(((((....(((((....)))))...((((......)))))))))... ( -42.70)
>DroSec_CAF1 3793 120 - 1
CAUGAACUUGAAGAUCACCAAGGUGCAUGAGAAUCCUUACACGGAUCUCAUGUACGAGGUGCUUAACGAUCAGAAUCUGUGGGCCGUUUGCGGUCGCUCAGCGGGUAAGUUGGAUUCUUC
..(((.(...(((..((((...((((((((((.(((......)))))))))))))..)))))))...).)))(((((....(((((....)))))...((((......)))))))))... ( -41.00)
>DroSim_CAF1 3813 120 - 1
CAUGAACUUGAAGAUCACCAAGGUGCAUGAGAAUCCCUACACGGAUCUCAUGUACGAGGUGCUUAACGAUCAGAAUCUGUGGGCCGUUUGCGGUCGCUCAGCGGGUAAGUUGGAUUCUCU
..(((.(...(((..((((...((((((((((.(((......)))))))))))))..)))))))...).)))(((((....(((((....)))))...((((......)))))))))... ( -40.50)
>consensus
CAUGAACUUGAAGAUCACCAAGGUGCAUGAGAAUCCCUACACGGAUCUCAUGUACGAGGUGCUUAACGAUCAGAAUCUGUGGGCCGUUUGCGGUCGCUCAGCGGGUAAGUUGGAUUCUCU
..(((..(((..((.((((...((((((((((.(((......)))))))))))))..)))).))..))))))(((((....(((((....)))))...((((......)))))))))... (-41.29 = -41.07 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:42 2006