| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,040,506 – 11,040,619 |
| Length | 113 |
| Max. P | 0.577255 |
| Location | 11,040,506 – 11,040,619 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -29.44 |
| Consensus MFE | -28.60 |
| Energy contribution | -28.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11040506 113 - 27905053 GAUCCAUGUCAUCGCAAGUGUGGCGGGGGAUCAAUGAGAAGCCAA-------ACGAAUUAAUUGCAAUGUACUCAUAGCACAUAUGGCCCAUGGCCAAGUAUUAUUAAUUAUUUAUCGCC (((((.(((((((....).))))))..)))))........((...-------...((((((((((.(((....))).)))....(((((...)))))......))))))).......)). ( -29.52) >DroSec_CAF1 3251 120 - 1 GAUCCAUGUCAUCGCAAGUGUGGCGGGGGAUCAAUAAGAAGCCAAAUUGAAAACGAAUUAAUUGCAAUGUACUCAUAGCACAUAUGGCCCAUGGCCAAGUAUUAUUAAUUAUUUAUCGUC (((((.(((((((....).))))))..)))))....................((((......(((.(((....))).)))....(((((...)))))..................)))). ( -29.50) >DroSim_CAF1 3258 120 - 1 GAUCCAUGUCAUCGCAAGUGUGGCGGGGGAUCAAUAAGAAGCCAAAUUGAAAACGAAUUAAUUGCAAUGUACUCAUAGCACAUAUGGCCCAUGGCCAAGUAUUAUUAAUUAUUUAUCGCC (((((.(((((((....).))))))..)))))................((.....((((((((((.(((....))).)))....(((((...)))))......))))))).....))... ( -29.30) >consensus GAUCCAUGUCAUCGCAAGUGUGGCGGGGGAUCAAUAAGAAGCCAAAUUGAAAACGAAUUAAUUGCAAUGUACUCAUAGCACAUAUGGCCCAUGGCCAAGUAUUAUUAAUUAUUUAUCGCC (((((.(((((((....).))))))..))))).......................((((((((((.(((....))).)))....(((((...)))))......))))))).......... (-28.60 = -28.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:39 2006