| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,040,289 – 11,040,409 |
| Length | 120 |
| Max. P | 0.810682 |
| Location | 11,040,289 – 11,040,409 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -41.60 |
| Consensus MFE | -40.44 |
| Energy contribution | -40.33 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11040289 120 + 27905053 GCUGUAGAGCUUCAGUGCCCUCGCCUGGAGUUUAAUGUACUGGAAUGGAAUCCUGCACGCAAGUUCUACGAAAGUCUUGGUGCCGUGGAUUUGACAGAUAAAGAGGGCUGGCACUACUAC ...((((.(((.....((((((..(((.(((.......)))....(.((((((.((((.((((....((....))))))))))...)))))).)))).....)))))).))).))))... ( -39.40) >DroSec_CAF1 3034 120 + 1 GCAGUAGAGCUUCAGUGCCCUCGCCUGGAGUUCAAUGUACUUGAAUGGAAUCCUGCACGCAAGUUCUACGAAAGUCUUGGUGCCGUGGAUUUGACGGAUAAAGAGGGCUGGCACUACUAC ..(((((.(((.....((((((.((....((((((.....)))))).((((((.((((.((((....((....))))))))))...))))))...)).....)))))).))).))))).. ( -43.40) >DroSim_CAF1 3041 120 + 1 GCAGUAGAGCUUCAGUGCCCUCCCCUGGAGUUCAAUGUACUUGAAUGGAAUCCUGCACCCAAGUUCUACGAAAGUCUUGGUGCCGUGGAUUUGACGGAUAAAGAGGGCUGGCACUACUAC ..(((((.(((.....((((((..(((..((((((.....)))))).((((((.(((((.(((....((....))))))))))...))))))..))).....)))))).))).))))).. ( -42.00) >consensus GCAGUAGAGCUUCAGUGCCCUCGCCUGGAGUUCAAUGUACUUGAAUGGAAUCCUGCACGCAAGUUCUACGAAAGUCUUGGUGCCGUGGAUUUGACGGAUAAAGAGGGCUGGCACUACUAC ...((((.(((.....((((((..(((..((((((.....)))))).((((((.((((.((((....((....))))))))))...))))))..))).....)))))).))).))))... (-40.44 = -40.33 + -0.11)
| Location | 11,040,289 – 11,040,409 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -36.83 |
| Consensus MFE | -33.67 |
| Energy contribution | -34.67 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.91 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11040289 120 - 27905053 GUAGUAGUGCCAGCCCUCUUUAUCUGUCAAAUCCACGGCACCAAGACUUUCGUAGAACUUGCGUGCAGGAUUCCAUUCCAGUACAUUAAACUCCAGGCGAGGGCACUGAAGCUCUACAGC ((((.(((..((((((((....((((...........((((((((.((.....))..)))).)))).(((......)))..............)))).))))))..))..)))))))... ( -33.20) >DroSec_CAF1 3034 120 - 1 GUAGUAGUGCCAGCCCUCUUUAUCCGUCAAAUCCACGGCACCAAGACUUUCGUAGAACUUGCGUGCAGGAUUCCAUUCAAGUACAUUGAACUCCAGGCGAGGGCACUGAAGCUCUACUGC (((((((.((((((((((...........(((((...((((((((.((.....))..)))).)))).)))))...(((((.....)))))........))))))..))..)).))))))) ( -37.60) >DroSim_CAF1 3041 120 - 1 GUAGUAGUGCCAGCCCUCUUUAUCCGUCAAAUCCACGGCACCAAGACUUUCGUAGAACUUGGGUGCAGGAUUCCAUUCAAGUACAUUGAACUCCAGGGGAGGGCACUGAAGCUCUACUGC (((((((.(((((((((((((........(((((...((((((((.((.....))..))).))))).)))))...(((((.....))))).....)))))))))..))..)).))))))) ( -39.70) >consensus GUAGUAGUGCCAGCCCUCUUUAUCCGUCAAAUCCACGGCACCAAGACUUUCGUAGAACUUGCGUGCAGGAUUCCAUUCAAGUACAUUGAACUCCAGGCGAGGGCACUGAAGCUCUACUGC (((((((.((((((((((...........(((((...((((((((.((.....))..)))).)))).)))))...(((((.....)))))........))))))..))..)).))))))) (-33.67 = -34.67 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:38 2006