Locus 4041

Sequence ID 3R_DroMel_CAF1
Location 11,033,524 – 11,033,644
Length 120
Max. P 0.538155
window6470

overview

Window 0

Location 11,033,524 – 11,033,644
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.25
Mean single sequence MFE -50.22
Consensus MFE -36.54
Energy contribution -37.06
Covariance contribution 0.52
Combinations/Pair 1.08
Mean z-score -1.66
Structure conservation index 0.73
SVM decision value 0.01
SVM RNA-class probability 0.538155
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11033524 120 + 27905053
ACUAGGACCUGCUGUUUGUUUAAUGCCCAUCCCAGGUUCAGUGCCUGGGCCAGCUCACGUUCCGUCUGCUCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUGUAGGUGCUGAACGGC
..(((.((((((.........(((((((..(((((((.....)))))))...((((.(....(((((((((((.....))).)))))))).))))).))))))))))))).)))...... ( -52.40)
>DroSec_CAF1 8823 120 + 1
ACUAAGACCUGCUGCUUGCUGGAGGCCCAUCCCAGGUUCAGUGCCUGCGCAAGCUCAUGUUCCGUCUGCUCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUGUAGGUGCUGAACGGG
.......((.........((((.((....))))))((((((..((((((...((((.((((((((((((((((.....))).)))))))..))))))))))..))))))..)))))))). ( -53.90)
>DroSim_CAF1 9508 120 + 1
ACUAAGACCUGCUGCUUGCUGGAGGCCCAUCCCAGGUUCAGUGCCUGCGCAAGCUCACGUUCCGUCUGCUCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUGUAGGUGCUGAACGGG
.......((.........((((.((....))))))((((((..((((((...((((..(((((((((((((((.....))).)))))))..))))).))))..))))))..)))))))). ( -51.30)
>DroEre_CAF1 11587 120 + 1
GUUAGGACCUGCUGCUUGCUGGAAGCCCAUCCCAAAUUCAGUCCCUGGGCCAGCUCACUUUCCGUCGCCCCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUAUAGGUGCUAAACGGC
.......((((((.(((((((((......)))....(((((((((((((.(.((.........)).).))))).)).))))))...)))))).)))))).((((.(((...))))))).. ( -43.00)
>DroYak_CAF1 8995 120 + 1
GACCGGACCUGCUGCUUGCUGGAUGCCCAUCCCAAAUUCAGUGCCUGGGCCAGCUCACGUUCCGUAUCCUCGGAGGCACUGAAGUAGGCGAGGAGCAGAGCGUUAUAGGUGCUGAACGGC
..(((...(((((.((((((((((....))))....(((((((((((((....))))...((((......)))))))))))))...)))))).)))))((((.......))))...))). ( -50.50)
>consensus
ACUAGGACCUGCUGCUUGCUGGAGGCCCAUCCCAGGUUCAGUGCCUGGGCCAGCUCACGUUCCGUCUGCUCGGAGGAACUGAAGUAGGCGAGGAGCAGGGCGUUGUAGGUGCUGAACGGC
.......((((((.(((((((((......)))....((((((.((((((....))))...((((......)))))).))))))...)))))).)))))).((((.(((...))))))).. (-36.54 = -37.06 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:30 2006