Locus 4037

Sequence ID 3R_DroMel_CAF1
Location 11,028,570 – 11,028,669
Length 99
Max. P 0.934325
window6465

overview

Window 5

Location 11,028,570 – 11,028,669
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 97.98
Mean single sequence MFE -17.42
Consensus MFE -16.24
Energy contribution -16.24
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.93
SVM decision value 1.24
SVM RNA-class probability 0.934325
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11028570 99 - 27905053
AUACAAAAUUCGCAUAAAUAAUCAAAUCUACAAAGUUUCAUUUUGGUUGUUUCCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUCU
.......(((((((((((((((((((...............))))))))))..............(((....))).......)))))))))........ ( -18.16)
>DroSec_CAF1 3882 99 - 1
AUACAAAAAUCGCAUAAAUAAUCAAAUCUGCAAAGUUUCAUUUUGGUUGUUUGCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU
.........(((((((..............((((((...))))))(((((((((.....))))))(((....))).)))...))))))).......... ( -18.20)
>DroSim_CAF1 4018 99 - 1
AUACAAAAAUCGCAUAAAUAAUCAAAUCUGCAAAGUUUCAUUUUGGUUGUUUGCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU
.........(((((((..............((((((...))))))(((((((((.....))))))(((....))).)))...))))))).......... ( -18.20)
>DroEre_CAF1 6739 99 - 1
AUACAAAAAUCGCAUAAAUAAUCAAAUCUACAAAGUUUCAUUUUGGUUGUUUCCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU
.........(((((((((((((((((...............))))))))))..............(((....))).......))))))).......... ( -16.26)
>DroYak_CAF1 4072 99 - 1
AUACAAAAAUCGCAUAAAUAAUCAAAUCUACAAAGUUUCAUUUUGGUUGUUUCCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU
.........(((((((((((((((((...............))))))))))..............(((....))).......))))))).......... ( -16.26)
>consensus
AUACAAAAAUCGCAUAAAUAAUCAAAUCUACAAAGUUUCAUUUUGGUUGUUUCCAUUAAGUAAACACGGCUACGUAAACAAAUAUGCGAAUAAGGAUGU
.........(((((((((((((((((...............))))))))))..............(((....))).......))))))).......... (-16.24 = -16.24 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:25 2006