Locus 4032

Sequence ID 3R_DroMel_CAF1
Location 11,015,142 – 11,015,237
Length 95
Max. P 0.528628
window6456

overview

Window 6

Location 11,015,142 – 11,015,237
Length 95
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 82.31
Mean single sequence MFE -31.07
Consensus MFE -23.65
Energy contribution -24.68
Covariance contribution 1.03
Combinations/Pair 1.29
Mean z-score -1.31
Structure conservation index 0.76
SVM decision value -0.01
SVM RNA-class probability 0.528628
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11015142 95 + 27905053
AGAACCAAGUCACCGCCAAUGGCAGU-GGCUCCAGUGAUGCACAUGGUACAGGCUAGCACCAGCAAAGGCGACGGCCAACGACCAGGCUCGAAGGA
........(((((.(((...))).))-)))(((..(((.((...((((...((((..(.((......)).)..))))....)))).)))))..))) ( -32.30)
>DroSec_CAF1 75865 95 + 1
CGAUCCAAGUCGCCGCCCAUGACAGU-GGCUCCAGUGGUGCACAUGGUACAGGCUAGCACCAGCAAAGGCGACGGCCAACGACCAGGCUCGAAGGA
...(((..((((((((((......).-))).....((((((...((((....)))))))))).....))))))((((........))))....))) ( -34.60)
>DroSim_CAF1 85512 95 + 1
CGAUCCAAGUCGCCGCCCAUGACAGU-GGCUCCAGUGGUGCACAUGGUACAGGCUAGCACCAGCAAAGGCGACAGCCAACGACCCGGCUCGAAGGA
...(((..((((((((((......).-))).....((((((...((((....)))))))))).....))))))((((........))))....))) ( -34.60)
>DroEre_CAF1 78197 95 + 1
CGUUCCAAGUCGCCGCCAAUGACAGU-GGCCCCAGUGGUACAAAUGGUUCAGGCCAGUACCAGCAAAGGCGACAGCCAACGACCAGGUUCGAAGGA
...(((..((((((((((.......)-))).....((((((...((((....)))))))))).....))))))((((........))))....))) ( -32.90)
>DroYak_CAF1 85907 95 + 1
CGAUCCAAGUCGCCGCCAAUGUCAGU-GGCUCCAGUGGUGCACAUGGUUCAGGCCAGCACCAGCAAAGGCGACAGCCAAAGACCAGGCUCGAAGGA
...(((..((((((((((.......)-))).....((((((...((((....)))))))))).....))))))((((........))))....))) ( -37.80)
>DroAna_CAF1 106533 92 + 1
CGCUCCAAAUCGCCACCCC----AAUCCACACAAUCGAUGCAAGUGGUCCAGGCUAGUACCAGUAAUAGUGGCAAUAAUCGACCCAGCUCCAAGGA
...(((.....(((((...----...((((.............))))....((......)).......))))).......((......))...))) ( -14.22)
>consensus
CGAUCCAAGUCGCCGCCAAUGACAGU_GGCUCCAGUGGUGCACAUGGUACAGGCUAGCACCAGCAAAGGCGACAGCCAACGACCAGGCUCGAAGGA
...(((..(((((((((.((....)).))).....((((((...((((....)))))))))).....))))))((((........))))....))) (-23.65 = -24.68 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:16 2006