Locus 4031

Sequence ID 3R_DroMel_CAF1
Location 11,014,399 – 11,014,497
Length 98
Max. P 0.766957
window6455

overview

Window 5

Location 11,014,399 – 11,014,497
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -36.66
Consensus MFE -31.50
Energy contribution -31.66
Covariance contribution 0.16
Combinations/Pair 1.11
Mean z-score -1.45
Structure conservation index 0.86
SVM decision value 0.52
SVM RNA-class probability 0.766957
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11014399 98 + 27905053
GCAUUUCCGGUUUGGCACUAACAGCCGCUGCAGCGGCCCACAUGUCGCUACAUCACCAGGCGGUGGUGGCGGAGGCAUUAACUGGAGCUUCAGUUGAA
((...(((((((((.......))(((.((((((((((......)))))).(((((((....))))))))))).)))...))))))))).......... ( -38.30)
>DroSec_CAF1 75124 98 + 1
GCAUUUCCGGUUUGGUACUAACAGCCGCUGCAGCGGCUCACAUGUCGCUACAUCACCAGGCUGUGGUGGCGGAGGCAUUAACUGGACCUUCAGUUGAA
........((((..((..(((..(((.((((((((((......)))))).((((((......)))))))))).))).)))))..)))).......... ( -35.80)
>DroSim_CAF1 84771 98 + 1
GCAUUUCCGGUUUGGUACUAACAGCCGCUGCAGCGGAUCACAUGUCGCUACAUCACCAGGCUGUGGUGGCGGAGGCAUUAACUGGAGCUUCAGUUGAA
((...((((((.....)))....(((((..((((((.....((((....))))..))..))))..)))))))).)).((((((((....)))))))). ( -32.70)
>DroEre_CAF1 77438 98 + 1
GCAUUUCCGGUUUGGUACUAACUGCCGCUGCAGCGGCACACAUGUCCUUGCACCACCAGACGGUGGUGGCGGAGGCAUUAACCGGAGGUUCAUCUGAA
(.((((((((((..........((((((....))))))...(((((..(((((((((....)))))).)))..))))).)))))))))).)....... ( -42.30)
>DroYak_CAF1 85144 98 + 1
GCAUGUCCGGUUUGGUACUUACUGCCACUGCUGCGGCUCACAUGUCCUUGCACCACCAGGCCGUGGUGGCGGAGGCAUUAACUGGAGGUUCAGGUGAA
(.((.(((((((.(((.(((.((((((((...((((((....(((....)))......))))))))))))))))).)))))))))).)).)....... ( -34.20)
>consensus
GCAUUUCCGGUUUGGUACUAACAGCCGCUGCAGCGGCUCACAUGUCGCUACAUCACCAGGCGGUGGUGGCGGAGGCAUUAACUGGAGCUUCAGUUGAA
.....(((((((.(.......).(((.((((((((((......)))))).((((((......)))))))))).)))...)))))))............ (-31.50 = -31.66 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:15 2006