| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,014,249 – 11,014,343 |
| Length | 94 |
| Max. P | 0.892717 |
| Location | 11,014,249 – 11,014,343 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 79.50 |
| Mean single sequence MFE | -34.87 |
| Consensus MFE | -25.49 |
| Energy contribution | -25.87 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11014249 94 - 27905053 GCCAGGGAAACUGAAACGGGCAUCAUCGGAGUCAACGGCUUGGAUACAGGAGGCAUGAUGGCCUUCGUCUUGGGUGUGGGCGUCGGUGGGACAG (((.((....))......))).((((((..(((.(((.((.((((...((((((......)))))))))).)).))).)))..))))))..... ( -35.60) >DroVir_CAF1 126592 79 - 1 GCUGG---------CGGCGGCGCUAUCGGUGGCUGUGGCUUAGGC---GCCGGCAAAAUGGCCUUGGGCAUGGGUGUAAGCGGCGGUG---CUG ...((---------((.((.((((..(((((.(((.....))).)---))))(((..(((.(....).)))...))).)))).)).))---)). ( -34.60) >DroSec_CAF1 74974 94 - 1 GCUAGGGAAACUGAAACGGGCACCAUCGGAGUCAACGGCUUGGAUACAGGAGGCAUAAUGGCCUUCGUCUUGGGUGUGGGCGUCGAUGGAACAG (((.((....))......))).((((((..(((.(((.((.((((...((((((......)))))))))).)).))).)))..))))))..... ( -37.10) >DroSim_CAF1 84621 94 - 1 GCUAGGGAAACCGAAACGGGCACCAUCGGAGUCAACGGCUUGGAUACAGGAGGCAUAAUGGCCUUCGUCUUAGGUGUGGGCGUCGAUGGAACAG (((.((....))......))).((((((..(((.(((.((.((((...((((((......)))))))))).)).))).)))..))))))..... ( -39.00) >DroEre_CAF1 77288 94 - 1 GCCAGGGAAACCGAAACGGGAACCAUCGGAGUCAACGCUUUGGAUACUGGAGGCAUUAUGGCCUUCGUCUUGGGUGUGGGCGUUGGUGGAACAG .((.((....))......))..(((((((.(((.(((((..((((...((((((......))))))))))..))))).))).)))))))..... ( -35.90) >DroYak_CAF1 84994 94 - 1 GCCAGAGAAACCGAAACGGGAACCAUCGGAGUCAACGGCUUGGAUACUGGUGGCAUUAUGGCCUUCGUCUUGGGUGUGGGCGUUGAUGGAACAG (((.......((((.(((((.((((((.((((.....)))).))...))))(((......)))))))).)))).....)))(((.....))).. ( -27.00) >consensus GCCAGGGAAACCGAAACGGGCACCAUCGGAGUCAACGGCUUGGAUACAGGAGGCAUAAUGGCCUUCGUCUUGGGUGUGGGCGUCGAUGGAACAG (((.((....))......))).((((((..(((.(((.((.((((...((((((......)))))))))).)).))).)))..))))))..... (-25.49 = -25.87 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:14 2006