| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,982,051 – 10,982,144 |
| Length | 93 |
| Max. P | 0.702717 |
| Location | 10,982,051 – 10,982,144 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 82.57 |
| Mean single sequence MFE | -15.57 |
| Consensus MFE | -9.54 |
| Energy contribution | -9.10 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.702717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10982051 93 - 27905053 ACU-ACAACGCACUGCAAUCUGAAGCUAAGUUAGUUUUCAUUUUUAUAAUGAGAUAUUUACUCUUUUAGUUCAGUUUUCUAUAGUUUUUUUUUU (((-(....((...))...(((((.(((((..((((((((((.....))))))).....)))..)))))))))).......))))......... ( -13.60) >DroSec_CAF1 47662 85 - 1 ACU-ACAACGCACUGCAAUCUGAAGCUAAGUUAGUUUUCAUUUUUAUAAUGAGAUAUUUGC----UUAGUUUAGUUAUUU----UUCAGUUUUU ...-.......((((.((.(((((.((((((.((((((((((.....))))))).))).))----))))))))).....)----).)))).... ( -16.40) >DroSim_CAF1 56660 85 - 1 ACU-ACAACGCACUGCAAUCUGAAGCUAAGUUAGUUUUCAUUUUUAUAAUGAGAUAUUUGC----UUAGUUUAGUUUUUU----UUCAGUUUUU ...-.......((((.((.(((((.((((((.((((((((((.....))))))).))).))----))))))))).....)----).)))).... ( -16.40) >DroYak_CAF1 57381 80 - 1 ACUCGCAACGCACUGCAAUCUGAAUCUAAGUUAGUUUUCAUUUUAAUAAUGAGAUAUUUGCUCUUUUAGUUCAGUUCUCC-------------- ....(((......)))...(((((.(((((..((((((((((.....))))))).....)))..))))))))))......-------------- ( -15.90) >consensus ACU_ACAACGCACUGCAAUCUGAAGCUAAGUUAGUUUUCAUUUUUAUAAUGAGAUAUUUGC____UUAGUUCAGUUUUCU____UUCAGUUUUU ...................(((((.((((((.((((((((((.....))))))).))).))....))))))))).................... ( -9.54 = -9.10 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:02 2006