Locus 4022

Sequence ID 3R_DroMel_CAF1
Location 10,981,679 – 10,981,771
Length 92
Max. P 0.915718
window6440

overview

Window 0

Location 10,981,679 – 10,981,771
Length 92
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 76.46
Mean single sequence MFE -34.54
Consensus MFE -9.60
Energy contribution -10.36
Covariance contribution 0.76
Combinations/Pair 1.32
Mean z-score -3.13
Structure conservation index 0.28
SVM decision value 1.10
SVM RNA-class probability 0.915718
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10981679 92 - 27905053
GCCUCGACAUUGCCACUUUUCCUGUUUGCCUCGCCAUCUUUC----------UGGUUAACAGGUGUACACGGACAAAGUG----GAAAAACAGA----GGAAUACUGCGG
.((((.......(((((((((((((.(((((.((((......----------))))....))))).))).))).))))))----).......))----)).......... ( -29.34)
>DroSec_CAF1 47290 92 - 1
GCCUCGACAUUGCCACUUUUCCUGUUUGCCUCUCCAUCCUUC----------UGGUUAACAGGUGCACACGGGCAAAGUG----GAAAAACAGA----GGAAUACUGCGG
.((((.......(((((((.(((((.(((.(((....((...----------.)).....))).))).))))).))))))----).......))----)).......... ( -30.94)
>DroSim_CAF1 56288 92 - 1
GCCUCGACAUUUCCACUUUUCCUGUUUGCCUCUCCAUCCUUC----------UGGUUAACAGGUGCACACGGGCAAAGUG----GAAAAACAGA----GGAAUACUGCGG
.((((....((((((((((.(((((.(((.(((....((...----------.)).....))).))).))))).))))))----))))....))----)).......... ( -33.90)
>DroEre_CAF1 49443 92 - 1
GCCUCGACAUUGCCACUUUUCCCGUUCACCUCUCCAUCUUUC----------UGGUUAACAGGUGCACACGGGGAAAGUG----GAAAAACAGA----GGCAUACUGCGG
(((((.......(((((((((((((.(((((..(((......----------))).....)))))...))))))))))))----).......))----)))......... ( -40.64)
>DroYak_CAF1 57012 92 - 1
GCCUCGACAUUGCCACUUUUCCCAUUUCCCUCCUCACCUUUC----------UGGUUAACAGGUGCUCACGGGGAAAGUG----GAAAAACAGA----GGCAUACUGCGG
(((((.......(((((((((((....((((....(((....----------.)))....))).).....))))))))))----).......))----)))......... ( -33.34)
>DroAna_CAF1 71975 106 - 1
AUCUCGUUCGUGCCUCUUUUCCUGCCCGGCUGUCUGUCCUUCUUCCGUUCUGUGUGUAACAGGUGCGGUUG--AAGAGUGACAGGUGAAAGGGAGAAAGGCCUUC--CAU
.........(.((((.(((((((...((.(((((.(..((((..(((((((((.....))))).))))..)--)))..)))))).))..))))))).)))))...--... ( -39.10)
>consensus
GCCUCGACAUUGCCACUUUUCCUGUUUGCCUCUCCAUCCUUC__________UGGUUAACAGGUGCACACGGGCAAAGUG____GAAAAACAGA____GGAAUACUGCGG
.............((((((.(((((.(((((....(((...............)))....)))))...))))).)))))).............................. ( -9.60 = -10.36 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:01 2006