Locus 4020

Sequence ID 3R_DroMel_CAF1
Location 10,975,300 – 10,975,392
Length 92
Max. P 0.789395
window6438

overview

Window 8

Location 10,975,300 – 10,975,392
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.18
Mean single sequence MFE -26.05
Consensus MFE -16.58
Energy contribution -16.88
Covariance contribution 0.31
Combinations/Pair 1.11
Mean z-score -2.49
Structure conservation index 0.64
SVM decision value 0.58
SVM RNA-class probability 0.789395
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10975300 92 + 27905053
----UGCCUGCGAG---CUGAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--AUGAAAUGUGACUAAUUUAUGUCAUGACCCACCCAUCCACCAACCC
----.((......)---)....(((((((.......)))))))((((((....--)))....(((((........)))))..........)))........ ( -16.00)
>DroPse_CAF1 52289 93 + 1
----CGGGUGGAAGACACUCAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--GUCAAAUGUGACUAAUUUAUGUCACGGC--CCCCAAACACUAACCC
----.(((.((..(((......(((((((.......)))))))((....))..--)))...((((((........)))))).)--))))............ ( -29.50)
>DroEre_CAF1 42972 89 + 1
----UUGGUGGGAG---CCCAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--CUGAAAUGUGGCUAAUUUAUGUCAUGAC--ACCCG-CCACCAACAA
----.(((((((((---((((.(((((((.......)))))))((....))..--......)).))))......(((....))--)))))-)))....... ( -30.60)
>DroYak_CAF1 50653 91 + 1
----UGAGUUGGAG---CCCAACUUAACCGACUUAAGGUUAAGGGACGUCCAACACUGAAAUGUGACUAAUUUAUGUCAUGAC--ACCCG-CCACCAAGCC
----...(((((((---(((...((((((.......))))))))).).))))))........(((((........)))))...--....(-(......)). ( -23.50)
>DroAna_CAF1 65451 93 + 1
GUGUUGGGAGGAAA---UUUAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--GUCAAAUGUGACUAAUUUAUGUCAUGGC--ACCCU-AUACUAACCC
((((.(((.(((..---.....(((((((.......))))))).....)))..--((((....((((........))))))))--.))).-))))...... ( -27.20)
>DroPer_CAF1 49459 93 + 1
----CGGGUGGAAGACACUCAACUUAACCGACUUAAGGUUAAGGGACGUCCAA--GUCAAAUGUGACUAAUUUAUGUCACGGC--CCCCAAACACUAACCC
----.(((.((..(((......(((((((.......)))))))((....))..--)))...((((((........)))))).)--))))............ ( -29.50)
>consensus
____UGGGUGGAAG___CUCAACUUAACCGACUUAAGGUUAAGGGACGUCCAA__GUCAAAUGUGACUAAUUUAUGUCAUGAC__ACCCA_ACACCAACCC
.....(((..............(((((((.......)))))))((....))..........((((((........)))))).....)))............ (-16.58 = -16.88 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:59 2006