Locus 402

Sequence ID 3R_DroMel_CAF1
Location 1,493,684 – 1,493,785
Length 101
Max. P 0.510917
window658

overview

Window 8

Location 1,493,684 – 1,493,785
Length 101
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.16
Mean single sequence MFE -27.18
Consensus MFE -18.02
Energy contribution -17.08
Covariance contribution -0.94
Combinations/Pair 1.33
Mean z-score -1.50
Structure conservation index 0.66
SVM decision value -0.04
SVM RNA-class probability 0.510917
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1493684 101 - 27905053
GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGGGUAAGUUUCGAAUAA---GAUACGAAUACUAAGUUCGUGUAGCUAACACU
..........(((....(((((((..((.....))..)))))))(((((((((......))))))))).---.((((((((.....)))))))).)))...... ( -27.30)
>DroSec_CAF1 2361 101 - 1
GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGGGUAAGUUUCGAAUAA---GAUACGAAUAUUUGGUUCGUGUAGCUAACACU
..........(((....(((((((..((.....))..)))))))(((((((((......))))))))).---.((((((((.....)))))))).)))...... ( -27.40)
>DroSim_CAF1 2367 101 - 1
GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGGGUAAGUUUCGAAUAA---GAUACGAAUAUUUGGUUCGUGUAGCUAACACU
..........(((....(((((((..((.....))..)))))))(((((((((......))))))))).---.((((((((.....)))))))).)))...... ( -27.40)
>DroEre_CAF1 2471 101 - 1
GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGCGUAAGUUUUGAAUAA---CUUAAAAACAUUUAGUUCGUGUAGUCAACGGU
..........(((((((((((.....((((((((.(((....))).)))))))).((((((......))---))))..........)))))))).)))...... ( -28.60)
>DroYak_CAF1 2423 101 - 1
GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUUGAAGCGUAAGUUUCAAAUAA---CUUAAAACCAUUUUGCUCGUGAAGUCAACACU
.(((....((((((...(((((((..((.....))..)))))))((((((((((....)))))))))).---.............))).)))...)))...... ( -30.90)
>DroAna_CAF1 2301 100 - 1
AGAAAUCAGCGGAAUGCGUACGUUUAGUUUCGAACAGGAUGUGCUCUUCGAGGCGUAAGUUGUCAACACUCUGUUUUGAAUACUUUGUAUUUCAAGUUA----U
..........((((((((((((((..((.....))..)))))))..(((((((((..(((.(....)))).)))))))))......)))))))......----. ( -21.50)
>consensus
GGACAUUAACGGCAUGCGGACGUUUAGCUUCGAGCAGGAUGUUCUAUUCGAAGCGUAAGUUUCGAAUAA___GAUACGAAUAUUUAGUUCGUGUAGCUAACACU
..........(((....(((((((..((.....))..)))))))(((((((((......)))))))))...........................)))...... (-18.02 = -17.08 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:18 2006