Locus 4017

Sequence ID 3R_DroMel_CAF1
Location 10,952,252 – 10,952,349
Length 97
Max. P 0.634810
window6435

overview

Window 5

Location 10,952,252 – 10,952,349
Length 97
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 86.35
Mean single sequence MFE -26.01
Consensus MFE -18.47
Energy contribution -18.51
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.80
Structure conservation index 0.71
SVM decision value 0.21
SVM RNA-class probability 0.634810
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10952252 97 - 27905053
GUUAAGGGCAUCAGUCAGGCAUCGCAUUCAGAUUAUGCCUCAUCUGUGGAAACUAGUUUUCCUUAAUUACCCACUCUAGGCCACUGAUUAUA----------UGCCC
.....((((((.((((((((((..(.....)...)))))......((((...((((...................)))).)))))))))..)----------))))) ( -25.41)
>DroSec_CAF1 21463 97 - 1
GUUAAGGGCAUCAGUCAGGCAUCGCAUUCAGAUUAUGCCUCAUCUGUGGAAACUAGUUUUCCUUAAUUACCCACUCUAGGCCACUGAUUAUG----------UGUCC
.....((((((.((((((((((..(.....)...)))))......((((...((((...................)))).)))))))))..)----------))))) ( -23.01)
>DroSim_CAF1 29206 97 - 1
GUUAAGGGCAUCAGUCAGGCAUCGCAUUCAGAUUAUGCCUCAUCUGUGGAAACUAGUUUUCCUUAAUUACCCACUCUAGGCCACUGAUUAUG----------UGUCC
.....((((((.((((((((((..(.....)...)))))......((((...((((...................)))).)))))))))..)----------))))) ( -23.01)
>DroEre_CAF1 22157 107 - 1
GCUAAGGGCAUCAGUCAGGCAUCAGAUUCAGAUUAUGCCUCAUAUGUGGAAACUAGAUUUCUUUAAUUACCCGCUCUAGGCCACUGAUUAUAUGUCUGAUUAUGUCC
.....((((((.((((((((((.....((((.....((((.....((((.....((....))........))))...))))..))))....)))))))))))))))) ( -30.32)
>DroYak_CAF1 29974 100 - 1
GUUAAGGGCAUCAGUCAGGCAUCGCAUUCGGAUUAUGCCUCAGCUGUGGAAACUAGUUUUCUUUGAUUACCCACUCAAGGCCACU-------UGUCUGAUUAUGUCC
.....((((((.(((((((((..((((.......))))...(((((.(....))))))..((((((........)))))).....-------))))))))))))))) ( -28.30)
>consensus
GUUAAGGGCAUCAGUCAGGCAUCGCAUUCAGAUUAUGCCUCAUCUGUGGAAACUAGUUUUCCUUAAUUACCCACUCUAGGCCACUGAUUAUA__________UGUCC
.....(((((......((((((............)))))).....((((...((((...................)))).))))..................))))) (-18.47 = -18.51 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:56 2006