Locus 4014

Sequence ID 3R_DroMel_CAF1
Location 10,938,935 – 10,939,028
Length 93
Max. P 0.797429
window6432

overview

Window 2

Location 10,938,935 – 10,939,028
Length 93
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 85.14
Mean single sequence MFE -20.11
Consensus MFE -13.29
Energy contribution -13.37
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -2.28
Structure conservation index 0.66
SVM decision value 0.61
SVM RNA-class probability 0.797429
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10938935 93 - 27905053
UCUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCACAACUGCCACAACUUCCUCAACUUCC---------ACACUCCCGCC--------------UUCCGGUGCGGAAUAAAU
..((((((..((..(..(((.........)))..)..))..)))))).................---------....(((((((--------------....)))).)))...... ( -19.50)
>DroSec_CAF1 8017 84 - 1
UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCC---------ACAACUUCCUCAACUUCC---------ACACUCCCGCC--------------UUCCGGUGCGGAAUAAAU
..((((((..(((...............))).)))))---------).................---------....(((((((--------------....)))).)))...... ( -16.46)
>DroSim_CAF1 15792 93 - 1
UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCACAACUGCCACAACUUCCUCAACUUCC---------ACACUCCCGCC--------------UUCCGGUGCGGAAUAAAU
..((((((..((..(..(((.........)))..)..))..)))))).................---------....(((((((--------------....)))).)))...... ( -19.60)
>DroEre_CAF1 8666 109 - 1
UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCACAACUGCCACAACUUCCUCAACUUCCUCAACUGCCACACUCCCGCCUGC-------CGCCUUCCGGUGCGGAAUAAAU
..((((((..((..(..(((.........)))..)..))..))))))................................((((..((-------((.....))))))))....... ( -21.50)
>DroYak_CAF1 16230 107 - 1
UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCGCAACUGCCACAACUUUCUCAACUUCC---------ACACUCCCGCCUUCCGCCUUCCGCUUUCCGGUGCGGAAUAAAU
..((((((((((....))))........(((......))).)))))).................---------...........((((((...(((.....))).))))))..... ( -23.50)
>consensus
UUUGGCAGACGUAUCUAUGUUUUAUCCCUGCACUGCCACAACUGCCACAACUUCCUCAACUUCC_________ACACUCCCGCC______________UUCCGGUGCGGAAUAAAU
..((((((..(((...............))).)))))).......................................(((((((..................)))).)))...... (-13.29 = -13.37 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:53 2006