Locus 4007

Sequence ID 3R_DroMel_CAF1
Location 10,917,755 – 10,917,846
Length 91
Max. P 0.558665
window6423

overview

Window 3

Location 10,917,755 – 10,917,846
Length 91
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 88.45
Mean single sequence MFE -35.87
Consensus MFE -27.33
Energy contribution -27.67
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.76
SVM decision value 0.05
SVM RNA-class probability 0.558665
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10917755 91 - 27905053
UUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUAUGGAGCUG--------UAUGGCU---UGUGG
.......((..(((((.(((((((...((((((...((..((((.(....).))))..))...))))))....))).))--------)))))))---..)). ( -35.60)
>DroSec_CAF1 188172 102 - 1
UUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUGUGGAGCUGUGGAGCAGUAUGUCUGUGUGUGG
.......(((((((((((((.(.((..((((((...((..(((((.((.......))..)))))...))..))))))..))).)))))).)))))))..... ( -36.30)
>DroEre_CAF1 187690 98 - 1
UUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUGAGCCUAUGGAGCUGUGGAGCUGUGGAGCUGUGGGGCU----GUGG
....((.(((((.((.(..(((((...((((((...((..((((.(....).))))..))...))))))....))).))..)))))))).))..----.... ( -35.70)
>consensus
UUUUCUGUAUGGGCUGCUGCACUCAAUGCUCCAAAUGCGAAUGGGGGAGACGCUAUCAGCCUAUGGAGCUGUGGAGCUGUGGAGC_GUAUGGCU___UGUGG
...............(((.(((.....((((((...((..((((.(....).))))..))...)))))).))).)))......................... (-27.33 = -27.67 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:44 2006