Locus 4006

Sequence ID 3R_DroMel_CAF1
Location 10,917,419 – 10,917,527
Length 108
Max. P 0.560871
window6422

overview

Window 2

Location 10,917,419 – 10,917,527
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 95.37
Mean single sequence MFE -23.87
Consensus MFE -21.17
Energy contribution -21.07
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.82
Structure conservation index 0.89
SVM decision value 0.05
SVM RNA-class probability 0.560871
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10917419 108 + 27905053
GAAAACAAAGUCAAAGAGGAAGGUGAAGUAGAAACCGAGAAGAGAAGCAGAAUCAAGAAAUAUUUUGUUGUGUGUACUCAAUUUUAAGUGGCACUUCAACUUCGUGUA
..............(.(.((((.((((((.(..((..(((((((..(((.((.(((((....))))))).)))...)))..))))..))..))))))).)))).).). ( -21.80)
>DroSec_CAF1 187842 108 + 1
GAAAACAAAGUCAAAGAGGAGGGUGAAGUAGAAACCGAGAAGAGAAGCAGAACCAAGAAAUAUUUUGUUGUGUGUACUCAACUUUAAGUGGCACUUCAACUUCGUGUA
..............(.(.((((.((((((.(..((.(((..(((..(((.(((.((((....))))))).)))...)))..)))...))..))))))).)))).).). ( -22.40)
>DroEre_CAF1 187367 107 + 1
GAAAACAGAGUCAAAGAGGAAGGUGAAGUGGAAACCGAGAGGAGAAGCAGAA-CAAGAAAUAUUUUGUUGUGUGUACUCAACUUUAAGUGGCACUUCUACUUCGUGUA
..............(.(.((((..((((((...((..(((((((..(((.((-(((((....))))))).)))...)))..))))..))..))))))..)))).).). ( -27.40)
>consensus
GAAAACAAAGUCAAAGAGGAAGGUGAAGUAGAAACCGAGAAGAGAAGCAGAA_CAAGAAAUAUUUUGUUGUGUGUACUCAACUUUAAGUGGCACUUCAACUUCGUGUA
..............(.(.((((.((((((.(..((.(((..(((..(((.((.(((((....))))))).)))...)))..)))...))..))))))).)))).).). (-21.17 = -21.07 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:43 2006